Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

16387082 .. 16387647

Gene Structure 566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGATTCGGTGGTGCTGGGCCATGGGGCTGTGCCGTGCTTCCTAGAGGCGGCAGGAGGGCCGGCGATGACCAAGACGGTGGCTTGGATTGGTATGCCGGAAATCACTGCGGCAGCTGGTCACGGGCAAGAAGATGGGCTGGAAAAATCCCTGAGAGATCGAGACCCTAGTTTGGAACTAGGGTTGACTGTTTGGTTGAATGGGCTATTTTCTGGGCCTATGATGAATGGGCCTTGGGCACAAACTGGGCTGCAGACAGGGACTGGGCCTATTGGGCTCCAATCTGAAAATGGGGGCTATATGCTGCAAACTCTCAAGACGAGCCCGAGGAGCGACCTGATGCCAAGGTTGTCCGCTATGGAGGAGGCTGCATATGGTGCTGGTTCCAACCCTACGGGGAAGGGACGCGCTTTCTTAAGTCCTCGAAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.01

Weight (kDa)

5.27

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	408
AciI	CCGC	3 cut(s)	50, 110, 354
AfiI	CCNNNNNNNGG	2 cut(s)	49, 172
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	2 cut(s)	116, 429
AluI	AGCT	2 cut(s)	116, 429
Alw26I	GTCTC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	5 cut(s)	19, 59, 215, 230, 266
ApeKI	GCWGC	4 cut(s)	113, 250, 304, 368
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	5 cut(s)	19, 59, 215, 230, 266
AvaI	CYCGRG	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	279, 326
BbvI	GCAGC	4 cut(s)	125, 237, 291, 355
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	44, 168, 179
BfmI	CTRYAG	1 cut(s)	251
BfrI	CTTAAG	1 cut(s)	415
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	6 cut(s)	51, 111, 114, 251, 305, 369
BlsI	GCNGC	6 cut(s)	52, 112, 115, 252, 306, 370
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	5 cut(s)	19, 59, 215, 230, 266
BmiI	GGNNCC	2 cut(s)	278, 385
BmrI	ACTGGG	2 cut(s)	255, 273
BmsI	GCATC	1 cut(s)	330
BmuI	ACTGGG	2 cut(s)	255, 273
BpuEI	CTTGAG	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	22, 233, 326, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 172
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	250, 268
BseDI	CCNNGG	4 cut(s)	22, 233, 326, 344
BseLI	CCNNNNNNNGG	2 cut(s)	49, 172
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	250, 268
BseRI	GAGGAG	2 cut(s)	343, 377
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	125, 237, 291, 355
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	21, 61, 217, 232, 268
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	62, 98
BslFI	GGGAC	2 cut(s)	274, 417
BslI	CCNNNNNNNGG	2 cut(s)	49, 172
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	274, 417
BsnI	GGCC	5 cut(s)	21, 61, 217, 232, 268
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	3 cut(s)	241, 279, 326
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	3 cut(s)	50, 110, 354
BspANI	GGCC	5 cut(s)	21, 61, 217, 232, 268
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	278, 385
BspMAI	CTGCAG	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	250, 268
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	22, 233, 326, 344
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	3 cut(s)	22, 233, 344
Bst4CI	ACNGT	2 cut(s)	79, 190
BstAFI	CTTAAG	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 330, 377
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	125, 237, 291, 355
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	21, 61, 217, 232, 268
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	19, 59, 215, 230, 266
CseI	GACGC	1 cut(s)	414
CviAII	CATG	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	22, 233, 344
Eco24I	GRGCYC	2 cut(s)	279, 326
Eco31I	GGTCTC	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	325
EcoT14I	CCWWGG	3 cut(s)	22, 233, 344
EcoT38I	GRGCYC	2 cut(s)	279, 326
ErhI	CCWWGG	3 cut(s)	22, 233, 344
FaeI	CATG	1 cut(s)	26
FaiI	YATR	8 cut(s)	24, 95, 221, 300, 302, 359, 373, 375
FaqI	GGGAC	2 cut(s)	274, 417
FatI	CATG	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	6 cut(s)	51, 111, 114, 251, 305, 369
FriOI	GRGCYC	2 cut(s)	279, 326
Fsp4HI	GCNGC	6 cut(s)	51, 111, 114, 251, 305, 369
FspBI	CTAG	3 cut(s)	44, 168, 179
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	6 cut(s)	51, 111, 114, 251, 305, 369
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	5 cut(s)	21, 61, 217, 232, 268
HapII	CCGG	2 cut(s)	62, 98
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	62, 98
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	161, 316
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	79, 190
HpyCH4V	TGCA	3 cut(s)	253, 307, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 330, 377
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	408
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	282, 330
Lsp1109I	GCAGC	4 cut(s)	125, 237, 291, 355
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	3 cut(s)	44, 168, 179
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	241, 279, 326
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	6 cut(s)	40, 50, 321, 355, 358, 432
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	2 cut(s)	62, 98
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	274, 330, 377
NaeI	GCCGGC	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	157
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	2 cut(s)	278, 385
NmuCI	GTSAC	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	6 cut(s)	52, 112, 115, 252, 306, 370
PspFI	CCCAGC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	278, 385
PspPI	GGNCC	5 cut(s)	19, 59, 215, 230, 266
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	6 cut(s)	51, 111, 114, 251, 305, 369
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	5 cut(s)	19, 59, 215, 230, 266
SduI	GDGCHC	3 cut(s)	241, 279, 326
SetI	ASST	4 cut(s)	118, 339, 350, 431
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	314, 415
SmoI	CTYRAG	2 cut(s)	314, 415
SsiI	CCGC	3 cut(s)	50, 110, 354
SspMI	CTAG	3 cut(s)	44, 168, 179
StyI	CCWWGG	3 cut(s)	22, 233, 344
TaaI	ACNGT	2 cut(s)	79, 190
TaqI	TCGA	2 cut(s)	160, 424
TauI	GCSGC	2 cut(s)	53, 113
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	4 cut(s)	113, 250, 304, 368
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	3 cut(s)	44, 168, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.