Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

16271654 .. 16272898

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCATCACAGAATACAACTGGAATTGGTGGGAGTGGCGGAAACGGAACGTTGGTCCCTCAAACCAATGATACAACTGGATCGGCAGCGGTTGATCGATCCAAAGCAAAACCTGAATCAGGTCATTAACTCTATTCAGAAAACTTTAGGCCTCATTCACCAGCTCTACCTCACGGTGTCTTCGTTCAATGCCGCATCTCAGCTTCCCCTCCTCCAACGCCTAAATGCCCTTGTTATGGAGCTTGACAACATGACTAAGCTGTCAGAAAAATGCAATATCCAGGTTCCTATGGAAGTTTTTAATTTGATCGATGATGGGAAGAATCCTGATGAATTCACGAGGGATGTCATTAATAGCTGCATTGCTAAGAATCAGATCACTAAAGGAAAAACTGATACCTTCAAGAGTTTACGCAAACATCTTCTGGAGGAACTTGAACAGACATTTCCGGATGAAGTTGAATCTTACAGAGACATACGTGCTGCATCTGCTGCTGAAACAAAACGGCTTGCACAAGCACAGAGCACACTACCAAATGGAGATGTGAAGGTCAAGCCGGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

189

Amino Acids

21.46

Weight (kDa)

6.44

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	3 cut(s)	38, 88, 192
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	2 cut(s)	87, 92
AcsI	RAATTY	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	118, 235
AgsI	TTSAA	4 cut(s)	187, 403, 437, 461
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	6 cut(s)	163, 202, 241, 259, 357, 562
AluI	AGCT	6 cut(s)	163, 202, 241, 259, 357, 562
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	87, 92
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	4 cut(s)	85, 357, 482, 491
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	4 cut(s)	97, 344, 469, 478
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	465
BisI	GCNGC	5 cut(s)	86, 192, 358, 483, 492
BlsI	GCNGC	5 cut(s)	87, 193, 359, 484, 493
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	56, 285
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	3 cut(s)	13, 203, 494
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	446
Bsa29I	ATCGAT	2 cut(s)	96, 309
BsaAI	YACGTR	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 235
Bse1I	ACTGG	2 cut(s)	24, 81
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	2 cut(s)	96, 309
BseGI	GGATG	2 cut(s)	349, 457
BseLI	CCNNNNNNNGG	2 cut(s)	118, 235
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	24, 81
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	97, 344, 469, 478
BshFI	GGCC	1 cut(s)	150
BshVI	ATCGAT	2 cut(s)	96, 309
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	449, 557
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	118, 235
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	5 cut(s)	79, 93, 97, 306, 375
BspACI	CCGC	3 cut(s)	38, 88, 192
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	2 cut(s)	96, 309
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	56, 285
BspPI	GGATC	2 cut(s)	87, 92
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	24, 81
BssMI	GATC	5 cut(s)	79, 93, 97, 306, 375
BssSI	CACGAG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	3 cut(s)	198, 255, 366
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	349, 457
BstKTI	GATC	5 cut(s)	82, 96, 100, 309, 378
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	5 cut(s)	79, 93, 97, 306, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 491
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	97, 344, 469, 478
BstV2I	GAAGAC	1 cut(s)	171
Bsu15I	ATCGAT	2 cut(s)	96, 309
BsuRI	GGCC	1 cut(s)	150
BsuTUI	ATCGAT	2 cut(s)	96, 309
BtsCI	GGATG	2 cut(s)	349, 457
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	54
ClaI	ATCGAT	2 cut(s)	96, 309
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	150, 163, 202, 241, 259, 357, 508, 556, 562
CviKI_1	RGCY	9 cut(s)	150, 163, 202, 241, 259, 357, 508, 556, 562
DdeI	CTNAG	3 cut(s)	198, 255, 366
DpnI	GATC	5 cut(s)	81, 95, 99, 308, 377
DpnII	GATC	5 cut(s)	79, 93, 97, 306, 375
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	253
FaiI	YATR	4 cut(s)	236, 251, 290, 476
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	86, 192, 358, 483, 492
FokI	GGATG	2 cut(s)	356, 464
Fsp4HI	GCNGC	5 cut(s)	86, 192, 358, 483, 492
GluI	GCNGC	5 cut(s)	86, 192, 358, 483, 492
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	449, 557
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	4 cut(s)	115, 322, 370, 461
HpaII	CCGG	2 cut(s)	449, 557
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	138, 265, 375
Hpy188III	TCNNGA	5 cut(s)	326, 337, 403, 425, 449
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	409, 541
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	49, 478
HpyCH4V	TGCA	5 cut(s)	4, 273, 360, 485, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 491
HpyF3I	CTNAG	3 cut(s)	198, 255, 366
HpySE526I	ACGT	2 cut(s)	49, 478
Hsp92II	CATG	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	79, 93, 97, 306, 375
LmnI	GCTCC	2 cut(s)	238, 559
Lsp1109I	GCAGC	4 cut(s)	97, 344, 469, 478
LweI	GCATC	3 cut(s)	13, 203, 494
MaeII	ACGT	2 cut(s)	49, 478
MalI	GATC	5 cut(s)	81, 95, 99, 308, 377
MboI	GATC	5 cut(s)	79, 93, 97, 306, 375
MboII	GAAGA	3 cut(s)	171, 331, 413
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	3 cut(s)	23, 301, 332
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	7 cut(s)	68, 161, 179, 218, 221, 333, 421
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	448
MseI	TTAA	4 cut(s)	126, 300, 351, 565
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	2 cut(s)	449, 557
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	488, 491
NdeII	GATC	5 cut(s)	79, 93, 97, 306, 375
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	56, 285
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	115, 322, 370, 461
PkrI	GCNGC	5 cut(s)	87, 193, 359, 484, 493
Ppu21I	YACGTR	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	56, 285
PspPI	GGNCC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	126, 300, 351, 565
SatI	GCNGC	5 cut(s)	86, 192, 358, 483, 492
Sau3AI	GATC	5 cut(s)	79, 93, 97, 306, 375
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	3 cut(s)	13, 203, 494
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	23, 301, 332
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	3 cut(s)	38, 88, 192
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	52, 481
TaqI	TCGA	2 cut(s)	96, 309
TasI	AATT	3 cut(s)	23, 301, 332
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	4 cut(s)	115, 322, 370, 461
Tru1I	TTAA	4 cut(s)	126, 300, 351, 565
Tru9I	TTAA	4 cut(s)	126, 300, 351, 565
TseI	GCWGC	4 cut(s)	85, 357, 482, 491
TspDTI	ATGAA	2 cut(s)	345, 468
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.