Rmu_sc0001758.1_g000044

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001758.1
Physical Location & Seq
Reverse (-)
250947 .. 253421
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001758.1_g000044.1.cds

Sequence Viewer

Length: 933 bp
atgctttggaaagccttagagatgcaaatattgctgaattccaatgctgggagtagtgggaatggcgacaatgggaagttagtccctcaaacaaatgatacagcaggagaaacaggggtggacgagcaaaaccaaaacctgaacgaggtcattaagtctaccgagaaaacattagccctcattcaccagctctacctcactgtctcttcattcactacaggttctcagctccccctcctcgagcgcctaaatgctcttgccatggagctggacaatacggctaagttgtcagacaaatacaacttccaggttcctatggagacagaggcgagtgaagggcggcgtgcacttggagaggctgtgatctctttgcaacgacgtcgggatcttgacctggtttttcgaaggctccggttgagtcaatgcttggctgagggtggttctatgaacatggggtgctggattgggtcggagccgaggtgttgctgccgacgctatcaggttgggctcaagtcagggctgctggagacgatggctccggtgctgtcaggctatggggctgtgctgggcttcgtggaggcgacaggagggtcaacgatgaccaggccggtggcttggactggtatgctggagatcagtgcggcggcgggtcacgggcaagaagactgtctagaaaaatcgccgggagaccctagttttgaattagggttgactgggctgctttctgggccgatgatgactgggccaagggcacgaactgggctgaaggcagggactgggcctatttggctcaaatctgaaaatggaggctatatgctgcaaactcttaagaagagcccgaggagcaacctgatgccaaggttgtcggctacggaggaggctgcatatggtgctggttccaaccctgcagggaagggactcgctctttcttaa

Protein Analysis

310

Amino Acids

33.08

Weight (kDa)

6.22

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 589
AatII GACGTC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 158
AciI CCGC 4 cut(s) 340, 641, 644, 647
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 785
AcyI GRCGYC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 48, 145
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 1 cut(s) 701
AjnI CCWGG 3 cut(s) 306, 393, 602
AluBI AGCT 3 cut(s) 190, 229, 268
AluI AGCT 3 cut(s) 190, 229, 268
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 4 cut(s) 208, 314, 521, 681
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 1 cut(s) 393
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 2 cut(s) 239, 838
AoxI GGCC 4 cut(s) 605, 728, 743, 779
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 5 cut(s) 486, 520, 718, 817, 881
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 3 cut(s) 728, 743, 779
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 239, 838
BaeGI GKGCMC 2 cut(s) 349, 754
BanII GRGCYC 2 cut(s) 510, 839
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 349
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 5 cut(s) 473, 507, 705, 804, 868
BccI CCATC 1 cut(s) 526
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 3 cut(s) 308, 395, 604
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 208, 314, 521, 681
BfaI CTAG 2 cut(s) 671, 693
BfmI CTRYAG 2 cut(s) 216, 906
BfoI RGCGCY 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 787
BisI GCNGC 8 cut(s) 341, 487, 521, 642, 645, 719, 818, 882
BlsI GCNGC 8 cut(s) 342, 488, 522, 643, 646, 720, 819, 883
Bme1390I CCNGG 4 cut(s) 308, 395, 604, 684
BmeT110I CYCGRG 2 cut(s) 239, 838
BmgT120I GGNCC 3 cut(s) 728, 743, 779
BmiI GGNNCC 5 cut(s) 312, 410, 474, 537, 898
BmrFI CCNGG 4 cut(s) 308, 395, 604, 684
BmrI ACTGGG 4 cut(s) 723, 750, 768, 786
BmsI GCATC 2 cut(s) 12, 843
BmuI ACTGGG 4 cut(s) 723, 750, 768, 786
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 545, 650
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 5 cut(s) 261, 476, 746, 839, 857
BsaWI WCCGGW 2 cut(s) 411, 538
BsaXI ACNNNNNCTCC 6 cut(s) 345, 375, 464, 494, 520, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 145
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 5 cut(s) 625, 718, 745, 763, 781
BseBI CCWGG 3 cut(s) 308, 395, 604
BseDI CCNNGG 5 cut(s) 261, 476, 746, 839, 857
BseLI CCNNNNNNNGG 2 cut(s) 48, 145
BseMII CTCAG 2 cut(s) 239, 423
BseNI ACTGG 5 cut(s) 625, 718, 745, 763, 781
BseRI GAGGAG 3 cut(s) 227, 856, 890
BseSI GKGCMC 2 cut(s) 349, 754
BseXI GCAGC 5 cut(s) 473, 507, 705, 804, 868
BseYI CCCAGC 2 cut(s) 47, 565
BshFI GGCC 4 cut(s) 607, 730, 745, 781
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 2 cut(s) 239, 838
BsiSI CCGG 4 cut(s) 412, 539, 608, 683
BslFI GGGAC 2 cut(s) 68, 787
BslI CCNNNNNNNGG 2 cut(s) 48, 145
BsmAI GTCTC 4 cut(s) 208, 314, 521, 681
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 2 cut(s) 68, 787
BsnI GGCC 4 cut(s) 607, 730, 745, 781
Bso31I GGTCTC 1 cut(s) 681
BsoBI CYCGRG 2 cut(s) 239, 838
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 4 cut(s) 349, 510, 754, 839
Bsp143I GATC 3 cut(s) 363, 385, 633
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 4 cut(s) 340, 641, 644, 647
BspANI GGCC 4 cut(s) 607, 730, 745, 781
BspCNI CTCAG 2 cut(s) 238, 424
BspLI GGNNCC 5 cut(s) 312, 410, 474, 537, 898
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 827
BspT104I TTCGAA 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 5 cut(s) 625, 718, 745, 763, 781
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 5 cut(s) 261, 476, 746, 839, 857
BssMI GATC 3 cut(s) 363, 385, 633
BssNI GRCGYC 1 cut(s) 379
BssT1I CCWWGG 3 cut(s) 261, 746, 857
Bst2UI CCWGG 3 cut(s) 308, 395, 604
Bst4CI ACNGT 2 cut(s) 202, 668
Bst6I CTCTTC 2 cut(s) 211, 827
BstACI GRCGYC 1 cut(s) 379
BstAFI CTTAAG 1 cut(s) 827
BstAPI GCANNNNNTGC 2 cut(s) 31, 890
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 16, 225, 282, 432
BstDSI CCRYGG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 366, 388, 636
BstMAI GTCTC 4 cut(s) 208, 314, 521, 681
BstMBI GATC 3 cut(s) 363, 385, 633
BstMWI GCNNNNNNNGC 6 cut(s) 31, 492, 727, 787, 843, 890
BstNI CCWGG 3 cut(s) 308, 395, 604
BstSCI CCNGG 4 cut(s) 306, 393, 602, 682
BstSFI CTRYAG 2 cut(s) 216, 906
BstSLI GKGCMC 2 cut(s) 349, 754
BstV1I GCAGC 5 cut(s) 473, 507, 705, 804, 868
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 2 cut(s) 268, 610
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 4 cut(s) 607, 730, 745, 781
BtgI CCRYGG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 198, 643
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 728, 743, 779
CseI GACGC 1 cut(s) 501
CsiI ACCWGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 262, 451
DdeI CTNAG 4 cut(s) 16, 225, 282, 432
DpnI GATC 3 cut(s) 365, 387, 635
DpnII GATC 3 cut(s) 363, 385, 633
DrdI GACNNNNNNGTC 1 cut(s) 589
DseDI GACNNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 211, 827
EarI CTCTTC 2 cut(s) 211, 827
Eco130I CCWWGG 3 cut(s) 261, 746, 857
Eco24I GRGCYC 2 cut(s) 510, 839
Eco31I GGTCTC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 785
Eco88I CYCGRG 2 cut(s) 239, 838
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 306, 393, 602
EcoT14I CCWWGG 3 cut(s) 261, 746, 857
EcoT38I GRGCYC 2 cut(s) 510, 839
ErhI CCWWGG 3 cut(s) 261, 746, 857
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 2 cut(s) 265, 454
FaqI GGGAC 2 cut(s) 68, 787
FatI CATG 2 cut(s) 261, 450
FauI CCCGC 1 cut(s) 640
FauNDI CATATG 1 cut(s) 886
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 8 cut(s) 341, 487, 521, 642, 645, 719, 818, 882
FriOI GRGCYC 2 cut(s) 510, 839
Fsp4HI GCNGC 8 cut(s) 341, 487, 521, 642, 645, 719, 818, 882
FspBI CTAG 2 cut(s) 671, 693
GlaI GCGC 1 cut(s) 245
GluI GCNGC 8 cut(s) 341, 487, 521, 642, 645, 719, 818, 882
GsaI CCCAGC 2 cut(s) 51, 569
GsuI CTGGAG 2 cut(s) 545, 650
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 4 cut(s) 607, 730, 745, 781
HapII CCGG 4 cut(s) 412, 539, 608, 683
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 379
Hin1II CATG 2 cut(s) 265, 454
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 2 cut(s) 594, 711
HindII GTYRAC 2 cut(s) 594, 711
HinfI GANTC 2 cut(s) 418, 918
HpaII CCGG 4 cut(s) 412, 539, 608, 683
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 5 cut(s) 121, 159, 347, 594, 711
Hpy188I TCNGA 3 cut(s) 292, 472, 799
Hpy188III TCNNGA 3 cut(s) 383, 389, 671
Hpy8I GTNNAC 5 cut(s) 121, 159, 347, 594, 711
Hpy99I CGWCG 3 cut(s) 381, 384, 495
HpyAV CCTTC 4 cut(s) 329, 399, 760, 907
HpyCH4III ACNGT 2 cut(s) 202, 668
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 6 cut(s) 25, 347, 373, 820, 884, 908
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 492, 727, 787, 843, 890
HpyF3I CTNAG 4 cut(s) 16, 225, 282, 432
HpySE526I ACGT 1 cut(s) 379
Hsp92I GRCGYC 1 cut(s) 379
Hsp92II CATG 2 cut(s) 265, 454
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 363, 385, 633
LguI GCTCTTC 1 cut(s) 827
LmnI GCTCC 6 cut(s) 234, 265, 414, 472, 541, 843
Lsp1109I GCAGC 5 cut(s) 473, 507, 705, 804, 868
LweI GCATC 2 cut(s) 12, 843
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 2 cut(s) 671, 693
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 650
MalI GATC 3 cut(s) 365, 387, 635
MboI GATC 3 cut(s) 363, 385, 633
MboII GAAGA 3 cut(s) 198, 674, 844
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 4 cut(s) 349, 510, 754, 839
MluCI AATT 2 cut(s) 37, 701
MlyI GAGTC 2 cut(s) 427, 912
MmeI TCCRAC 2 cut(s) 450, 924
MseI TTAA 3 cut(s) 153, 828, 931
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 4 cut(s) 412, 539, 608, 683
MspR9I CCNGG 4 cut(s) 308, 395, 604, 684
MvaI CCWGG 3 cut(s) 308, 395, 604
MwoI GCNNNNNNNGC 6 cut(s) 31, 492, 727, 787, 843, 890
NciI CCSGG 1 cut(s) 684
NcoI CCATGG 1 cut(s) 261
NdeI CATATG 1 cut(s) 886
NdeII GATC 3 cut(s) 363, 385, 633
NlaIII CATG 2 cut(s) 265, 454
NlaIV GGNNCC 5 cut(s) 312, 410, 474, 537, 898
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 650
NspV TTCGAA 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 827
PkrI GCNGC 8 cut(s) 342, 488, 522, 643, 646, 720, 819, 883
PleI GAGTC 2 cut(s) 426, 912
PpsI GAGTC 2 cut(s) 426, 912
Psp6I CCWGG 3 cut(s) 306, 393, 602
PspFI CCCAGC 2 cut(s) 47, 565
PspGI CCWGG 3 cut(s) 306, 393, 602
PspN4I GGNNCC 5 cut(s) 312, 410, 474, 537, 898
PspPI GGNCC 3 cut(s) 728, 743, 779
PspXI VCTCGAGB 1 cut(s) 239
PstI CTGCAG 1 cut(s) 910
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 827
SaqAI TTAA 3 cut(s) 153, 828, 931
SatI GCNGC 8 cut(s) 341, 487, 521, 642, 645, 719, 818, 882
Sau3AI GATC 3 cut(s) 363, 385, 633
Sau96I GGNCC 3 cut(s) 728, 743, 779
SbfI CCTGCAGG 1 cut(s) 910
SchI GAGTC 2 cut(s) 427, 912
ScrFI CCNGG 4 cut(s) 308, 395, 604, 684
SdaI CCTGCAGG 1 cut(s) 910
SduI GDGCHC 4 cut(s) 349, 510, 754, 839
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 2 cut(s) 12, 843
SfcI CTRYAG 2 cut(s) 216, 906
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 3 cut(s) 239, 509, 827
SmoI CTYRAG 3 cut(s) 239, 509, 827
Sse8387I CCTGCAGG 1 cut(s) 910
Sse9I AATT 2 cut(s) 37, 701
SsiI CCGC 4 cut(s) 340, 641, 644, 647
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 671, 693
StyD4I CCNGG 4 cut(s) 306, 393, 602, 682
StyI CCWWGG 3 cut(s) 261, 746, 857
TaaI ACNGT 2 cut(s) 202, 668
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 240, 403
TasI AATT 2 cut(s) 37, 701
TauI GCSGC 3 cut(s) 343, 644, 647
Tru1I TTAA 3 cut(s) 153, 828, 931
Tru9I TTAA 3 cut(s) 153, 828, 931
TscAI CASTG 2 cut(s) 205, 643
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 5 cut(s) 486, 520, 718, 817, 881
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 2 cut(s) 198, 461
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 2 cut(s) 205, 643
Vha464I CTTAAG 1 cut(s) 827
VneI GTGCAC 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 670
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 2 cut(s) 671, 693
ZraI GACGTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.