Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

11532556 .. 11533042

Gene Structure 487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19692.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATGCATTGATGACTGCAAATGCTGGTATCGGTGGGAGTGGCGGCAATGAGATAATGATTCCTCAAATCAATGATTCAGTAGTGGATAATCCAAAGCAAGGCCTGAACCAGCTCTACCTTACTGTGTCGTCGTTTAACGCTGGCTCGGAGCACCCCTTCCAGCACCTAAATGCTCTTGTTACGGAGCTTGACAATATGGCCAAGTTGTCTGACAAGTGCACTATTCAGGTTCCTGCAGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGAGATGTCATAAGCAGTTGTATTGTGAAAAATCAGATCACTAAAGGCAAAAGTGATGCCTTCAAGAGTTTGCGCAAACATCTTCTGGACCAACTTGAACATGCATTTCCTGATGAAGTTGAATCATACAGAGACATACGTGCTGCTCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

148

Amino Acids

16.2

Weight (kDa)

4.95

Isoelectric Point (pI)

24.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	34 - 140	8.9e-31	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	362
AciI	CCGC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	352, 386, 410
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw21I	GWGCWC	2 cut(s)	156, 224
Alw26I	GTCTC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	103, 201
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	156, 224
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	46, 432
BlsI	GCNGC	2 cut(s)	47, 433
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	2 cut(s)	105, 203
BsiHKAI	GWGCWC	2 cut(s)	156, 224
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	105, 203
Bsp1286I	GDGCHC	2 cut(s)	156, 224
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	105, 203
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	105, 203
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	376
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	5 cut(s)	105, 115, 147, 190, 203
CviKI_1	RGCY	5 cut(s)	105, 115, 147, 190, 203
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	376
EcoT22I	ATGCAT	2 cut(s)	10, 394
FaeI	CATG	1 cut(s)	392
FaiI	YATR	5 cut(s)	200, 299, 390, 415, 425
FatI	CATG	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	46, 432
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	46, 432
FspBI	CTAG	1 cut(s)	442
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	46, 432
HaeIII	GGCC	2 cut(s)	105, 203
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	392
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	61, 77, 271, 410
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	151, 214, 324
Hpy188III	TCNNGA	4 cut(s)	275, 352, 374, 398
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	169, 358
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	8, 20, 222, 239, 392
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	1 cut(s)	392
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	151, 187
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	442
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	156, 224
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	250, 281
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	2 cut(s)	75, 235
Mox20I	TGGCCA	1 cut(s)	203
Mph1103I	ATGCAT	2 cut(s)	10, 394
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	138, 249
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	203
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	234
NsbI	TGCGCA	1 cut(s)	362
NsiI	ATGCAT	2 cut(s)	10, 394
NspI	RCATGY	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	61, 77, 271, 410
PkrI	GCNGC	2 cut(s)	47, 433
Ppu21I	YACGTR	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PstI	CTGCAG	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	138, 249
SatI	GCNGC	2 cut(s)	46, 432
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	376
SduI	GDGCHC	2 cut(s)	156, 224
SetI	ASST	7 cut(s)	117, 123, 171, 192, 234, 246, 430
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	250, 281
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	442
StuI	AGGCCT	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	430
TasI	AATT	2 cut(s)	250, 281
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	61, 77, 271, 410
Tru1I	TTAA	2 cut(s)	138, 249
Tru9I	TTAA	2 cut(s)	138, 249
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	294, 417
TspGWI	ACGGA	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	1 cut(s)	442
Zsp2I	ATGCAT	2 cut(s)	10, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.