Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

58201371 .. 58201662

Gene Structure 292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAGCTGGACAATATGGCTAACTTGTCAGACAAATGCAATTTCCAGATTCCTATGGAGGTTATTAAGTTGATAGTCGACTATGGAAAGAATCCTGATTTACTTACAAGGGATCTCATAAATAGCTGCAATGCCAAAAATGAGATCACTAAAGGCAAAACTGATACCTTCAAAGCAAATGCCGAGTTTACATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

65

Amino Acids

7.39

Weight (kDa)

4.85

Isoelectric Point (pI)

0.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	2 - 59	2.3e-14	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	7, 126
AluI	AGCT	2 cut(s)	7, 126
AlwI	GGATC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	112, 144
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	2 cut(s)	112, 144
BstKTI	GATC	2 cut(s)	115, 147
BstMBI	GATC	2 cut(s)	112, 144
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
CviJI	RGCY	3 cut(s)	7, 20, 126
CviKI_1	RGCY	3 cut(s)	7, 20, 126
DpnI	GATC	2 cut(s)	114, 146
DpnII	GATC	2 cut(s)	112, 144
FaiI	YATR	4 cut(s)	17, 56, 84, 119
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	49, 91
Hpy166II	GTNNAC	2 cut(s)	79, 189
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	46, 95
Hpy8I	GTNNAC	2 cut(s)	79, 189
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	39, 129
Kzo9I	GATC	2 cut(s)	112, 144
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	59, 108
Lsp1109I	GCAGC	1 cut(s)	113
MalI	GATC	2 cut(s)	114, 146
MboI	GATC	2 cut(s)	112, 144
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	66
NdeII	GATC	2 cut(s)	112, 144
PfeI	GAWTC	2 cut(s)	49, 91
PkrI	GCNGC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	112, 144
SetI	ASST	4 cut(s)	9, 63, 128, 170
SgeI	CNNG	5 cut(s)	20, 37, 58, 107, 120
Sse9I	AATT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	49, 91
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.