Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

34072512 .. 34073682

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATGCATCGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAATGGGATATTGGTCCCTCAAACCAATGATACAGCAGGAGCAACAGGGTTGGATGATCCAAACCAAGACCTGAACCAGGTCATTAACTCAATTCAGAAGACTTTAGGGCTCATTCACCAGTTCTACCTCACTGTCTCTTCATTCAATGCCAGCTTGCAGCTCCCTCTCCTCCAGCGCCTGAGACTTTCTCACATTAGGCTTGACCTCTCAGAAATGCTCTTGTTATGGAACTTGACAATATCCAAGTTGTCTGACAAATGCAATATCCAAGTTCCTATGGAGTTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGCTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTCGACGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTTTGCTGCTGCTTTAAACTCTTCTCATTTGATACAAGAAACAAAACGGCTTGCACAAGCACAAAGCACATTGCCAAATGGAGATGTGAAGGTCAAACCCGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

209

Amino Acids

23.11

Weight (kDa)

5.36

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	46 - 169	3.9e-26	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	449
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	193, 439, 473, 497
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	201, 208, 393
AluI	AGCT	3 cut(s)	201, 208, 393
Alw26I	GTCTC	2 cut(s)	187, 223
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	620
ApeKI	GCWGC	5 cut(s)	205, 393, 518, 527, 530
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	225, 450
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	5 cut(s)	217, 380, 505, 514, 517
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	187, 223
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	5 cut(s)	206, 394, 519, 528, 531
BlsI	GCNGC	5 cut(s)	207, 395, 520, 529, 532
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BpmI	CTGGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	3 cut(s)	55, 396, 590
BseBI	CCWGG	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	11
BseGI	GGATG	3 cut(s)	10, 106, 385
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	3 cut(s)	55, 396, 590
BseMII	CTCAG	2 cut(s)	218, 270
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	5 cut(s)	217, 380, 505, 514, 517
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	187, 223
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	103, 411
BspCNI	CTCAG	2 cut(s)	219, 269
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	3 cut(s)	55, 396, 590
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	103, 411
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	190, 547
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	199, 203, 573
BstDEI	CTNAG	2 cut(s)	227, 256
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	10, 106, 385
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 450
BstKTI	GATC	2 cut(s)	106, 414
BstMAI	GTCTC	2 cut(s)	187, 223
BstMBI	GATC	2 cut(s)	103, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 527
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	217, 380, 505, 514, 517
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	10, 106, 385
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	199, 203, 573
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	2 cut(s)	225, 450
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	123
CviJI	RGCY	6 cut(s)	157, 201, 208, 247, 393, 571
CviKI_1	RGCY	6 cut(s)	157, 201, 208, 247, 393, 571
DdeI	CTNAG	2 cut(s)	227, 256
DpnI	GATC	2 cut(s)	105, 413
DpnII	GATC	2 cut(s)	103, 411
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	190, 547
EarI	CTCTTC	2 cut(s)	190, 547
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	5 cut(s)	274, 326, 386, 502, 504
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	5 cut(s)	206, 394, 519, 528, 531
FokI	GGATG	3 cut(s)	17, 113, 392
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	5 cut(s)	206, 394, 519, 528, 531
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	2 cut(s)	224, 449
GluI	GCNGC	5 cut(s)	206, 394, 519, 528, 531
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	2 cut(s)	225, 450
Hin6I	GCGC	2 cut(s)	223, 448
HinP1I	GCGC	2 cut(s)	223, 448
HinfI	GANTC	2 cut(s)	358, 497
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	4 cut(s)	144, 259, 301, 411
Hpy188III	TCNNGA	4 cut(s)	362, 439, 461, 485
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	445, 604
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	6 cut(s)	8, 20, 205, 309, 396, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 527
HpyF3I	CTNAG	2 cut(s)	227, 256
HpySE526I	ACGT	1 cut(s)	514
HspAI	GCGC	2 cut(s)	223, 448
Kzo9I	GATC	2 cut(s)	103, 411
LmnI	GCTCC	2 cut(s)	86, 213
Lsp1109I	GCAGC	5 cut(s)	217, 380, 505, 514, 517
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	123
MaeII	ACGT	1 cut(s)	514
MalI	GATC	2 cut(s)	105, 413
MboI	GATC	2 cut(s)	103, 411
MboII	GAAGA	4 cut(s)	157, 177, 449, 534
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	138, 337, 368
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	75, 185, 222, 227, 263
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	3 cut(s)	132, 336, 536
MspA1I	CMGCKG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	524, 527
NdeII	GATC	2 cut(s)	103, 411
NlaIV	GGNNCC	1 cut(s)	63
NsbI	TGCGCA	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	358, 497
PkrI	GCNGC	5 cut(s)	207, 395, 520, 529, 532
Ppu21I	YACGTR	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	132, 336, 536
SatI	GCNGC	5 cut(s)	206, 394, 519, 528, 531
Sau3AI	GATC	2 cut(s)	103, 411
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	159
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	138, 337, 368
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	11, 462
TasI	AATT	3 cut(s)	138, 337, 368
TfiI	GAWTC	2 cut(s)	358, 497
Tru1I	TTAA	3 cut(s)	132, 336, 536
Tru9I	TTAA	3 cut(s)	132, 336, 536
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	5 cut(s)	205, 393, 518, 527, 530
TspDTI	ATGAA	4 cut(s)	29, 177, 381, 504
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.