Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

43410683 .. 43413058

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGAGGGCCTCCGAAACTTACGGAGAGACCCGAGCAGGCGAAACCTAGGTTTAGCGATGGTGGCGGAGAGCATCGTGTTCTCCAGACCAGACAGAGGCGGGTGGACGGCGGCGTGGGCTCGGAGAGGCCGTGGTCTCTTCAGCAACGGCACTGGAACCTTGACCAAGCTTTTCGAAGGCTCCGGTTGAGTCAAGGCTCGACTGAGGGTAGTTTTCTGAACGTCGATGGCCGGATCGGGTCGAAGTCATGGAGGTGGTATCGAAGCCGGCAGATTTCTGGGCGACTAGGATCTGCGTTGGTATGGCGGCGTCAGCGAACTAAGATTGGGCTCAAGTCGGGGCTGCTGGGGAGGTCGATGGCTTCGGGTTCTGTGGCTGTGCCGCGTTTCTTGGAGGCGGCAGGAGGGCCGGCGATGACTGAGCCGGTCACTGTACTAGAGATCAGTGCGGCGGTACGTCGCAAGGAAGAAGACGACGCGCGACGCCGATTGGTAAGCCATAATCAGTCCTACGACAACCTCACACCCAAATCAATCGACCTCTTCTCCGCCTCTTACCTCTCAATCCACTCTCAGACCAAAGACCTCCTCACCTTCCTCGAGTCCACTCTCGAACCTGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTAGCCCACAAAGCTAGAGCTCAGTCTCTCTCCTCCTCCACCGACCTTGGGGCAAGAAGTCTACACCCTCTTCCAATTTCAACCCACCAGAGATCCAGATGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

269

Amino Acids

30.24

Weight (kDa)

11.3

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	194 - 249	1.3e-16	RdRP1/2, RRM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	760
AccII	CGCG	4 cut(s)	385, 479, 481, 672
AclWI	GGATC	3 cut(s)	242, 298, 786
AcoI	YGGCCR	2 cut(s)	229, 679
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	310, 484
AfaI	GTAC	2 cut(s)	435, 456
AfiI	CCNNNNNNNGG	2 cut(s)	96, 747
AgsI	TTSAA	1 cut(s)	780
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	3 cut(s)	170, 713, 719
AluI	AGCT	3 cut(s)	170, 713, 719
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	3 cut(s)	22, 141, 729
AlwI	GGATC	3 cut(s)	242, 298, 786
Ama87I	CYCGRG	2 cut(s)	32, 599
AoxI	GGCC	5 cut(s)	8, 128, 229, 407, 679
ApeKI	GCWGC	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspA2I	CCTAGG	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	8, 407
AsuHPI	GGTGA	2 cut(s)	583, 685
AsuII	TTCGAA	1 cut(s)	175
AvaI	CYCGRG	2 cut(s)	32, 599
AvrII	CCTAGG	1 cut(s)	47
BanII	GRGCYC	3 cut(s)	122, 333, 721
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	6 cut(s)	53, 221, 352, 632, 641, 792
BceAI	ACGGC	3 cut(s)	115, 124, 164
BcoDI	GTCTC	3 cut(s)	22, 141, 729
BfaI	CTAG	5 cut(s)	48, 287, 437, 701, 714
BisI	GCNGC	8 cut(s)	112, 308, 344, 383, 399, 450, 673, 682
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	8 cut(s)	113, 309, 345, 384, 400, 451, 674, 683
BmeT110I	CYCGRG	2 cut(s)	32, 599
BmgT120I	GGNCC	2 cut(s)	8, 407
BmiI	GGNNCC	2 cut(s)	158, 182
BmsI	GCATC	2 cut(s)	82, 693
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	310, 484
BsaI	GGTCTC	2 cut(s)	22, 141
BsaJI	CCNNGG	4 cut(s)	47, 131, 670, 745
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 747
Bse118I	RCCGGY	3 cut(s)	267, 409, 424
Bse1I	ACTGG	3 cut(s)	158, 665, 688
BseDI	CCNNGG	4 cut(s)	47, 131, 670, 745
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	96, 747
BseMII	CTCAG	4 cut(s)	195, 411, 587, 734
BseNI	ACTGG	3 cut(s)	158, 665, 688
BseRI	GAGGAG	3 cut(s)	578, 721, 724
BseX3I	CGGCCG	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	4 cut(s)	385, 479, 481, 672
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	5 cut(s)	10, 130, 231, 409, 681
BsiEI	CGRYCG	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	721
BsiHKCI	CYCGRG	2 cut(s)	32, 599
BsiSI	CCGG	5 cut(s)	184, 232, 268, 410, 425
BslI	CCNNNNNNNGG	2 cut(s)	96, 747
BsmAI	GTCTC	3 cut(s)	22, 141, 729
BsnI	GGCC	5 cut(s)	10, 130, 231, 409, 681
Bso31I	GGTCTC	2 cut(s)	22, 141
BsoBI	CYCGRG	2 cut(s)	32, 599
Bsp119I	TTCGAA	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	122, 333, 721
Bsp143I	GATC	4 cut(s)	234, 290, 441, 791
BspANI	GGCC	5 cut(s)	10, 130, 231, 409, 681
BspCNI	CTCAG	4 cut(s)	196, 412, 586, 733
BspFNI	CGCG	4 cut(s)	385, 479, 481, 672
BspLI	GGNNCC	2 cut(s)	158, 182
BspPI	GGATC	3 cut(s)	242, 298, 786
BspT104I	TTCGAA	1 cut(s)	175
BspTNI	GGTCTC	2 cut(s)	22, 141
BsrFI	RCCGGY	3 cut(s)	267, 409, 424
BsrI	ACTGG	3 cut(s)	158, 665, 688
BssAI	RCCGGY	3 cut(s)	267, 409, 424
BssECI	CCNNGG	4 cut(s)	47, 131, 670, 745
BssMI	GATC	4 cut(s)	234, 290, 441, 791
BssNI	GRCGYC	2 cut(s)	310, 484
BssT1I	CCWWGG	2 cut(s)	47, 745
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	3 cut(s)	144, 548, 774
BstACI	GRCGYC	2 cut(s)	310, 484
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	39, 269, 411, 646
BstDEI	CTNAG	5 cut(s)	204, 321, 420, 573, 720
BstDSI	CCRYGG	2 cut(s)	131, 670
BstF5I	GGATG	1 cut(s)	684
BstFNI	CGCG	4 cut(s)	385, 479, 481, 672
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	237, 293, 444, 794
BstMAI	GTCTC	3 cut(s)	22, 141, 729
BstMBI	GATC	4 cut(s)	234, 290, 441, 791
BstMCI	CGRYCG	1 cut(s)	682
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 117, 313, 678, 681, 710
BstUI	CGCG	4 cut(s)	385, 479, 481, 672
BstV1I	GCAGC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	290, 791
BstYI	RGATCY	2 cut(s)	290, 791
BstZI	CGGCCG	1 cut(s)	679
BsuRI	GGCC	5 cut(s)	10, 130, 231, 409, 681
BtgI	CCRYGG	2 cut(s)	131, 670
BtgZI	GCGATG	2 cut(s)	72, 428
BtsCI	GGATG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	151, 429, 451
Cac8I	GCNNGC	4 cut(s)	39, 269, 411, 646
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	3 cut(s)	267, 409, 424
Cfr13I	GGNCC	2 cut(s)	8, 407
Cfr42I	CCGCGG	1 cut(s)	673
CseI	GACGC	3 cut(s)	299, 485, 492
Csp6I	GTAC	2 cut(s)	434, 455
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	1 cut(s)	249
CviQI	GTAC	2 cut(s)	434, 455
DdeI	CTNAG	5 cut(s)	204, 321, 420, 573, 720
DpnI	GATC	4 cut(s)	236, 292, 443, 793
DpnII	GATC	4 cut(s)	234, 290, 441, 791
EaeI	YGGCCR	2 cut(s)	229, 679
EagI	CGGCCG	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	144, 548, 774
EarI	CTCTTC	3 cut(s)	144, 548, 774
EciI	GGCGGA	2 cut(s)	81, 538
Ecl136II	GAGCTC	1 cut(s)	719
EclXI	CGGCCG	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	47, 745
Eco24I	GRGCYC	3 cut(s)	122, 333, 721
Eco31I	GGTCTC	2 cut(s)	22, 141
Eco52I	CGGCCG	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	2 cut(s)	32, 599
EcoICRI	GAGCTC	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	47, 745
EcoT38I	GRGCYC	3 cut(s)	122, 333, 721
ErhI	CCWWGG	2 cut(s)	47, 745
FaeI	CATG	1 cut(s)	252
FaiI	YATR	3 cut(s)	250, 304, 501
FatI	CATG	1 cut(s)	248
FauI	CCCGC	2 cut(s)	93, 677
FblI	GTMKAC	1 cut(s)	760
Fnu4HI	GCNGC	8 cut(s)	112, 308, 344, 383, 399, 450, 673, 682
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	3 cut(s)	122, 333, 721
Fsp4HI	GCNGC	8 cut(s)	112, 308, 344, 383, 399, 450, 673, 682
FspBI	CTAG	5 cut(s)	48, 287, 437, 701, 714
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	8 cut(s)	112, 308, 344, 383, 399, 450, 673, 682
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	5 cut(s)	10, 130, 231, 409, 681
HapII	CCGG	5 cut(s)	184, 232, 268, 410, 425
HgaI	GACGC	3 cut(s)	299, 485, 492
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	2 cut(s)	310, 484
Hin1II	CATG	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	190, 602, 620
HpaII	CCGG	5 cut(s)	184, 232, 268, 410, 425
HphI	GGTGA	2 cut(s)	583, 685
Hpy166II	GTNNAC	4 cut(s)	106, 606, 693, 761
Hpy188I	TCNGA	4 cut(s)	15, 124, 219, 576
Hpy188III	TCNNGA	3 cut(s)	85, 611, 795
Hpy8I	GTNNAC	4 cut(s)	106, 606, 693, 761
Hpy99I	CGWCG	4 cut(s)	227, 462, 479, 486
HpyAV	CCTTC	2 cut(s)	171, 604
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	2 cut(s)	222, 457
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 117, 313, 678, 681, 710
HpyF3I	CTNAG	5 cut(s)	204, 321, 420, 573, 720
HpySE526I	ACGT	2 cut(s)	222, 457
Hsp92I	GRCGYC	2 cut(s)	310, 484
Hsp92II	CATG	1 cut(s)	252
HspAI	GCGC	1 cut(s)	479
KroI	GCCGGC	2 cut(s)	267, 409
KroNI	GCCGGC	2 cut(s)	269, 411
KspI	CCGCGG	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	234, 290, 441, 791
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	82, 693
MaeI	CTAG	5 cut(s)	48, 287, 437, 701, 714
MaeII	ACGT	2 cut(s)	222, 457
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	4 cut(s)	236, 292, 443, 793
MboI	GATC	4 cut(s)	234, 290, 441, 791
MboII	GAAGA	6 cut(s)	131, 479, 482, 535, 619, 761
MflI	RGATCY	2 cut(s)	290, 791
MhlI	GDGCHC	3 cut(s)	122, 333, 721
MluCI	AATT	1 cut(s)	774
MlyI	GAGTC	3 cut(s)	199, 611, 614
MroNI	GCCGGC	2 cut(s)	267, 409
MslI	CAYNNNNRTG	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	672
MspI	CCGG	5 cut(s)	184, 232, 268, 410, 425
MvnI	CGCG	4 cut(s)	385, 479, 481, 672
MwoI	GCNNNNNNNGC	6 cut(s)	63, 117, 313, 678, 681, 710
NaeI	GCCGGC	2 cut(s)	269, 411
NdeII	GATC	4 cut(s)	234, 290, 441, 791
NgoMIV	GCCGGC	2 cut(s)	267, 409
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	158, 182
NmuCI	GTSAC	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdiI	GCCGGC	2 cut(s)	269, 411
PkrI	GCNGC	8 cut(s)	113, 309, 345, 384, 400, 451, 674, 683
PleI	GAGTC	3 cut(s)	198, 610, 614
PpsI	GAGTC	3 cut(s)	198, 610, 614
Psp124BI	GAGCTC	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	158, 182
PspPI	GGNCC	2 cut(s)	8, 407
PspXI	VCTCGAGB	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	290, 791
RsaI	GTAC	2 cut(s)	435, 456
RsaNI	GTAC	2 cut(s)	434, 455
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	721
SacII	CCGCGG	1 cut(s)	673
SatI	GCNGC	8 cut(s)	112, 308, 344, 383, 399, 450, 673, 682
Sau3AI	GATC	4 cut(s)	234, 290, 441, 791
Sau96I	GGNCC	2 cut(s)	8, 407
SchI	GAGTC	3 cut(s)	199, 611, 614
SduI	GDGCHC	3 cut(s)	122, 333, 721
SfaNI	GCATC	2 cut(s)	82, 693
Sfr274I	CTCGAG	1 cut(s)	599
Sfr303I	CCGCGG	1 cut(s)	673
SfuI	TTCGAA	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	673
SlaI	CTCGAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	332, 599
SmoI	CTYRAG	2 cut(s)	332, 599
Sse9I	AATT	1 cut(s)	774
SspMI	CTAG	5 cut(s)	48, 287, 437, 701, 714
SstI	GAGCTC	1 cut(s)	721
StyI	CCWWGG	2 cut(s)	47, 745
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	2 cut(s)	225, 460
TasI	AATT	1 cut(s)	774
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	7 cut(s)	114, 310, 385, 401, 452, 675, 684
TscAI	CASTG	3 cut(s)	158, 436, 451
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	427
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	158, 436, 451
XhoI	CTCGAG	1 cut(s)	599
XmaJI	CCTAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	760
XspI	CTAG	5 cut(s)	48, 287, 437, 701, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.