RLG00000028830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001018
Physical Location & Seq
Forward (+)
28825964 .. 28827609
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028830

Sequence Viewer

Length: 711 bp
ATGGGGTTGGGCTTCGATTGGGGAGGCTTCGAGGTGCGGTCGAGGATCAGAGAATTGGCGGGACTGGCAGAGGAAGATGAGGAGGAGGAGCCCAAGACTGGGCCTTGGCCCTTGAATTTACCGCTCCGGTTGAGTCAAGGCTCGACTGAGGGTGGTTTTCCGAACGTCGATGGCCGGATCGGGTCGAAGCCATGGCGGTGGTATCGAAGCCGGCAGATTTCTGGGCGACTAGGATCTGCGTTGGTATGGCGGCGTCAGCGAACTGAGATTGGGCTCAAGTCGGGGCTGCTGGGGAGGTCGGTGGCTTCTGGTTCTGTGGTTGTGTCGCGTTTCTTGGAGGAGGCAGGAGGGCCGGCGATGATTGAGCCGGTCACTGTACTGGAGATCAGTGCGGCGGTACGTCGCAAGGAAGAAGACGGTCCGAAAAAAATGGAGGGAAGCCCTAGTCTTGACTTAGGGTTGACTGCTAGCTGGACTGGACCAGCTTCTGGGGCAAAGACTAGGCCTAGGGCAGGAAACGGGCCAAAGGCAGGGACTGGGGTGAAGGCAAGGAATGGGCCTATGTGGCTCAAATCCATAAATGAGGGCAATATGCTGCAGATTCTCAAGAAGAGCTTAAGAAGTAACCTGATGCCTAGGTTGTTGGCTACTGAGGAGGTTGCAGATGGTGTTGGTTCCAACCCTACGGGGAAGGGACTCGCGCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.27

Weight (kDa)

9.98

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 488
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 2 cut(s) 328, 701
AciI CCGC 7 cut(s) 37, 59, 122, 196, 250, 392, 395
AclWI GGATC 3 cut(s) 53, 185, 241
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 2 cut(s) 378, 399
AfiI CCNNNNNNNGG 5 cut(s) 98, 99, 488, 512, 530
AflII CTTAAG 1 cut(s) 616
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 3 cut(s) 471, 485, 615
AluI AGCT 3 cut(s) 471, 485, 615
AlwI GGATC 3 cut(s) 53, 185, 241
AlwNI CAGNNNCTG 2 cut(s) 488, 536
AoxI GGCC 7 cut(s) 101, 107, 172, 350, 503, 521, 557
ApeKI GCWGC 2 cut(s) 286, 595
ApoI RAATTY 1 cut(s) 115
AspA2I CCTAGG 2 cut(s) 506, 635
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 7 cut(s) 101, 108, 350, 419, 479, 521, 557
AsuHPI GGTGA 1 cut(s) 553
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 2 cut(s) 419, 479
AvrII CCTAGG 2 cut(s) 506, 635
BanII GRGCYC 2 cut(s) 93, 276
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 273, 582
BccI CCATC 2 cut(s) 164, 659
BfaI CTAG 6 cut(s) 230, 444, 468, 501, 507, 636
BfmI CTRYAG 1 cut(s) 596
BfrI CTTAAG 1 cut(s) 616
BglI GCCNNNNNGGC 1 cut(s) 565
BisI GCNGC 4 cut(s) 251, 287, 393, 596
BlnI CCTAGG 2 cut(s) 506, 635
BlsI GCNGC 4 cut(s) 252, 288, 394, 597
Bme18I GGWCC 2 cut(s) 419, 479
BmgT120I GGNCC 7 cut(s) 101, 108, 350, 419, 479, 521, 557
BmiI GGNNCC 2 cut(s) 90, 676
BmrI ACTGGG 2 cut(s) 108, 546
BmsI GCATC 1 cut(s) 621
BmtI GCTAGC 1 cut(s) 471
BmuI ACTGGG 2 cut(s) 108, 546
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 401
BpuEI CTTGAG 2 cut(s) 260, 590
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 104, 191, 506, 635
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 99, 488, 512, 530
Bse118I RCCGGY 3 cut(s) 210, 352, 367
Bse1I ACTGG 5 cut(s) 69, 103, 384, 481, 541
BseDI CCNNGG 4 cut(s) 104, 191, 506, 635
BseLI CCNNNNNNNGG 5 cut(s) 98, 99, 488, 512, 530
BseMII CTCAG 3 cut(s) 138, 255, 642
BseNI ACTGG 5 cut(s) 69, 103, 384, 481, 541
BseRI GAGGAG 5 cut(s) 95, 98, 101, 353, 668
BseXI GCAGC 2 cut(s) 273, 582
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 328, 701
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 7 cut(s) 103, 109, 174, 352, 505, 523, 559
BsiEI CGRYCG 1 cut(s) 41
BsiSI CCGG 5 cut(s) 127, 175, 211, 353, 368
BslFI GGGAC 2 cut(s) 75, 547
BslI CCNNNNNNNGG 5 cut(s) 98, 99, 488, 512, 530
BsmFI GGGAC 2 cut(s) 75, 547
BsnI GGCC 7 cut(s) 103, 109, 174, 352, 505, 523, 559
Bsp1286I GDGCHC 2 cut(s) 93, 276
Bsp143I GATC 4 cut(s) 45, 177, 233, 384
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 7 cut(s) 37, 59, 122, 196, 250, 392, 395
BspANI GGCC 7 cut(s) 103, 109, 174, 352, 505, 523, 559
BspCNI CTCAG 3 cut(s) 139, 256, 643
BspFNI CGCG 2 cut(s) 328, 701
BspLI GGNNCC 2 cut(s) 90, 676
BspMAI CTGCAG 1 cut(s) 600
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 3 cut(s) 53, 185, 241
BspQI GCTCTTC 1 cut(s) 605
BspTI CTTAAG 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 124
BsrFI RCCGGY 3 cut(s) 210, 352, 367
BsrI ACTGG 5 cut(s) 69, 103, 384, 481, 541
BssAI RCCGGY 3 cut(s) 210, 352, 367
BssECI CCNNGG 4 cut(s) 104, 191, 506, 635
BssMI GATC 4 cut(s) 45, 177, 233, 384
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 4 cut(s) 104, 191, 506, 635
Bst4CI ACNGT 2 cut(s) 376, 419
Bst6I CTCTTC 1 cut(s) 605
BstACI GRCGYC 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 212, 354, 469
BstDEI CTNAG 4 cut(s) 147, 264, 454, 651
BstDSI CCRYGG 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 510
BstFNI CGCG 2 cut(s) 328, 701
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 4 cut(s) 48, 180, 236, 387
BstMBI GATC 4 cut(s) 45, 177, 233, 384
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 4 cut(s) 65, 256, 491, 565
BstSFI CTRYAG 1 cut(s) 596
BstUI CGCG 2 cut(s) 328, 701
BstV1I GCAGC 2 cut(s) 273, 582
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 198
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 7 cut(s) 103, 109, 174, 352, 505, 523, 559
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 372, 394
Cac8I GCNNGC 3 cut(s) 212, 354, 469
CaiI CAGNNNCTG 2 cut(s) 488, 536
CfoI GCGC 1 cut(s) 703
Cfr10I RCCGGY 3 cut(s) 210, 352, 367
Cfr13I GGNCC 7 cut(s) 101, 108, 350, 419, 479, 521, 557
CpoI CGGWCCG 1 cut(s) 419
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 377, 398
CspI CGGWCCG 1 cut(s) 419
CviAII CATG 1 cut(s) 192
CviQI GTAC 2 cut(s) 377, 398
DdeI CTNAG 4 cut(s) 147, 264, 454, 651
DpnI GATC 4 cut(s) 47, 179, 235, 386
DpnII GATC 4 cut(s) 45, 177, 233, 384
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
Eco130I CCWWGG 4 cut(s) 104, 191, 506, 635
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 2 cut(s) 93, 276
Eco47I GGWCC 2 cut(s) 419, 479
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoT14I CCWWGG 4 cut(s) 104, 191, 506, 635
EcoT38I GRGCYC 2 cut(s) 93, 276
ErhI CCWWGG 4 cut(s) 104, 191, 506, 635
FaeI CATG 1 cut(s) 195
FaiI YATR 5 cut(s) 193, 247, 563, 578, 593
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 2 cut(s) 75, 547
FatI CATG 1 cut(s) 191
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 251, 287, 393, 596
FriOI GRGCYC 2 cut(s) 93, 276
Fsp4HI GCNGC 4 cut(s) 251, 287, 393, 596
FspBI CTAG 6 cut(s) 230, 444, 468, 501, 507, 636
GlaI GCGC 1 cut(s) 702
GluI GCNGC 4 cut(s) 251, 287, 393, 596
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 7 cut(s) 103, 109, 174, 352, 505, 523, 559
HapII CCGG 5 cut(s) 127, 175, 211, 353, 368
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 1 cut(s) 195
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 3 cut(s) 133, 601, 696
HpaII CCGG 5 cut(s) 127, 175, 211, 353, 368
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 3 cut(s) 50, 162, 423
Hpy188III TCNNGA 2 cut(s) 449, 607
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 2 cut(s) 170, 405
HpyAV CCTTC 2 cut(s) 538, 685
HpyCH4III ACNGT 2 cut(s) 376, 419
HpyCH4IV ACGT 2 cut(s) 165, 400
HpyCH4V TGCA 2 cut(s) 598, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 256, 491, 565
HpyF3I CTNAG 4 cut(s) 147, 264, 454, 651
HpySE526I ACGT 2 cut(s) 165, 400
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 1 cut(s) 195
HspAI GCGC 1 cut(s) 701
KroI GCCGGC 2 cut(s) 210, 352
KroNI GCCGGC 2 cut(s) 212, 354
Kzo9I GATC 4 cut(s) 45, 177, 233, 384
LguI GCTCTTC 1 cut(s) 605
LmnI GCTCC 2 cut(s) 88, 129
Lsp1109I GCAGC 2 cut(s) 273, 582
LweI GCATC 1 cut(s) 621
MaeI CTAG 6 cut(s) 230, 444, 468, 501, 507, 636
MaeII ACGT 2 cut(s) 165, 400
MaeIII GTNAC 2 cut(s) 370, 623
MalI GATC 4 cut(s) 47, 179, 235, 386
MbiI CCGCTC 1 cut(s) 124
MboI GATC 4 cut(s) 45, 177, 233, 384
MboII GAAGA 4 cut(s) 86, 422, 425, 622
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 93, 276
MluCI AATT 2 cut(s) 53, 115
MlyI GAGTC 2 cut(s) 142, 690
MmeI TCCRAC 1 cut(s) 702
MroNI GCCGGC 2 cut(s) 210, 352
MseI TTAA 2 cut(s) 617, 709
MslI CAYNNNNRTG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 616
MspI CCGG 5 cut(s) 127, 175, 211, 353, 368
MvnI CGCG 2 cut(s) 328, 701
MwoI GCNNNNNNNGC 4 cut(s) 65, 256, 491, 565
NaeI GCCGGC 2 cut(s) 212, 354
NcoI CCATGG 1 cut(s) 191
NdeII GATC 4 cut(s) 45, 177, 233, 384
NgoMIV GCCGGC 2 cut(s) 210, 352
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 2 cut(s) 90, 676
NmuCI GTSAC 1 cut(s) 370
PceI AGGCCT 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 605
PdiI GCCGGC 2 cut(s) 212, 354
PfeI GAWTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 4 cut(s) 252, 288, 394, 597
PleI GAGTC 2 cut(s) 141, 690
PpsI GAGTC 2 cut(s) 141, 690
PspFI CCCAGC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 90, 676
PspPI GGNCC 7 cut(s) 101, 108, 350, 419, 479, 521, 557
PstI CTGCAG 1 cut(s) 600
PstNI CAGNNNCTG 2 cut(s) 488, 536
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 2 cut(s) 378, 399
RsaNI GTAC 2 cut(s) 377, 398
RseI CAYNNNNRTG 1 cut(s) 196
Rsr2I CGGWCCG 1 cut(s) 419
RsrII CGGWCCG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 605
SaqAI TTAA 2 cut(s) 617, 709
SatI GCNGC 4 cut(s) 251, 287, 393, 596
Sau3AI GATC 4 cut(s) 45, 177, 233, 384
Sau96I GGNCC 7 cut(s) 101, 108, 350, 419, 479, 521, 557
SchI GAGTC 2 cut(s) 142, 690
SduI GDGCHC 2 cut(s) 93, 276
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 1 cut(s) 596
SinI GGWCC 2 cut(s) 419, 479
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 3 cut(s) 275, 605, 616
SmoI CTYRAG 3 cut(s) 275, 605, 616
Sse9I AATT 2 cut(s) 53, 115
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 7 cut(s) 37, 59, 122, 196, 250, 392, 395
SspMI CTAG 6 cut(s) 230, 444, 468, 501, 507, 636
StuI AGGCCT 1 cut(s) 505
StyI CCWWGG 4 cut(s) 104, 191, 506, 635
TaaI ACNGT 2 cut(s) 376, 419
TaiI ACGT 2 cut(s) 168, 403
TaqI TCGA 7 cut(s) 15, 30, 41, 143, 168, 185, 205
TasI AATT 2 cut(s) 53, 115
TatI WGTACW 1 cut(s) 376
TauI GCSGC 2 cut(s) 253, 395
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 617, 709
Tru9I TTAA 2 cut(s) 617, 709
TscAI CASTG 2 cut(s) 379, 394
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 286, 595
Tsp45I GTSAC 1 cut(s) 370
TspRI CASTG 2 cut(s) 379, 394
Van91I CCANNNNNTGG 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 419, 479
XagI CCTNNNNNAGG 1 cut(s) 510
XapI RAATTY 1 cut(s) 115
XmaJI CCTAGG 2 cut(s) 506, 635
XspI CTAG 6 cut(s) 230, 444, 468, 501, 507, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.