Rroxscaffold_7G00176820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001018
Physical Location & Seq
Reverse (-)
16446378 .. 16447579
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176820.1

Sequence Viewer

Length: 201 bp
ATGATGACTGGGCCTAGGGCACGACCTGGGCTGAAGGCAGGGACTGAGCCTATTTGGCTCAAATCTAAAAATGGGGGCTATATGCTGCTAACTCTCAAGAAGAGCCCGAGGAGCAACCTAATGCCAAGGTTGTCGGCTACGGAGGAGGCTGCATATGGTGCTGGTTCCAACCTTACGGGGAAGGGACTTGCGCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.95

Weight (kDa)

10.45

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 85, 149
AspA2I CCTAGG 1 cut(s) 14
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 106
AvrII CCTAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 72, 136
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 86, 150
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 2 cut(s) 87, 151
Bme1390I CCNGG 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 14, 26, 107, 125
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 14, 26, 107, 125
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 124, 158
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 2 cut(s) 72, 136
BshFI GGCC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 22, 107
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 14, 26, 107, 125
BssT1I CCWWGG 2 cut(s) 14, 125
Bst2UI CCWGG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 55, 111, 158
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 72, 136
BsuRI GGCC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 11
CviJI RGCY 8 cut(s) 13, 31, 49, 58, 78, 105, 137, 149
CviKI_1 RGCY 8 cut(s) 13, 31, 49, 58, 78, 105, 137, 149
DdeI CTNAG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 14, 125
Eco24I GRGCYC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 14, 125
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 2 cut(s) 14, 125
FaiI YATR 4 cut(s) 81, 83, 154, 156
FaqI GGGAC 1 cut(s) 55
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 86, 150
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 86, 150
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 86, 150
HaeIII GGCC 1 cut(s) 13
HhaI GCGC 1 cut(s) 193
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 28, 175
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 111, 158
HpyF3I CTNAG 1 cut(s) 45
HspAI GCGC 1 cut(s) 191
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 4 cut(s) 12, 24, 39, 147
Lsp1109I GCAGC 2 cut(s) 72, 136
MaeI CTAG 1 cut(s) 15
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 22, 107
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 102, 136, 139
MseI TTAA 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 55, 111, 158
NdeI CATATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 87, 151
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 199
SatI GCNGC 2 cut(s) 86, 150
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 22, 107
SetI ASST 4 cut(s) 28, 120, 131, 174
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 2 cut(s) 14, 125
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TseI GCWGC 2 cut(s) 85, 149
TspGWI ACGGA 1 cut(s) 155
XmaJI CCTAGG 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.