RLG00000014162

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001018
Physical Location & Seq
Forward (+)
48399558 .. 48401013
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014162

Sequence Viewer

Length: 351 bp
ATGCATAGTGTCACCACCACTCTCGAAGCTAACATGGCTTCCAAAATCACCATCATCACAGGGTGGTTTTGTGAATGTGGGTTGTTGGATCGGGTCGGAGCCGAGGCATTGCTGTCGACGCCACCAGGTTTCGGGGCGACTGGGATCTGCATCATTGTGGCGGCCTCCACTGACCAAGGTTGGGCTCAAGTCGGGGCTGTTGGAGACGATGGCTCCGGTGTCGTCGGGCTATGGGTTGTGCCGCGCTTTGTGGAGGCAGCAGGAGGGCCCGCAATGACTGGGCCGGTGGCTTGGACTGGTATGCTGGAGATCAGTGCGGTGGCAGATAACGGGCAAGAAGACGGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

11.68

Weight (kDa)

4.05

Isoelectric Point (pI)

18.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 244
AciI CCGC 4 cut(s) 161, 242, 270, 317
AclWI GGATC 2 cut(s) 96, 152
AcyI GRCGYC 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 131, 181
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 96, 152
AoxI GGCC 3 cut(s) 162, 266, 281
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 4 cut(s) 266, 267, 281, 344
AsuHPI GGTGA 2 cut(s) 4, 40
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 2 cut(s) 187, 270
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 59, 203
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 198
BisI GCNGC 3 cut(s) 162, 242, 258
BlsI GCNGC 3 cut(s) 163, 243, 259
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 4 cut(s) 266, 267, 281, 344
BmiI GGNNCC 4 cut(s) 100, 214, 268, 346
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 2 cut(s) 150, 288
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 2 cut(s) 150, 288
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 102, 175
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 181
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 3 cut(s) 145, 283, 301
Bse3DI GCAATG 2 cut(s) 107, 279
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 102, 175
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 131, 181
BseMI GCAATG 2 cut(s) 107, 279
BseNI ACTGG 3 cut(s) 145, 283, 301
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 164, 268, 283
BsiSI CCGG 2 cut(s) 216, 284
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 131, 181
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 164, 268, 283
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 187, 270
Bsp143I GATC 3 cut(s) 88, 144, 309
BspACI CCGC 4 cut(s) 161, 242, 270, 317
BspANI GGCC 3 cut(s) 164, 268, 283
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 100, 214, 268, 346
BspPI GGATC 2 cut(s) 96, 152
BsrDI GCAATG 2 cut(s) 107, 279
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 3 cut(s) 145, 283, 301
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 102, 175
BssMI GATC 3 cut(s) 88, 144, 309
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 270
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 91, 147, 312
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 88, 144, 309
BstMWI GCNNNNNNNGC 2 cut(s) 35, 118
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 3 cut(s) 164, 268, 283
BtsIMutI CAGTG 2 cut(s) 168, 319
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 266, 267, 281, 344
CseI GACGC 1 cut(s) 127
CsiI ACCWGGT 1 cut(s) 124
CviAII CATG 1 cut(s) 34
DpnI GATC 3 cut(s) 90, 146, 311
DpnII GATC 3 cut(s) 88, 144, 309
DraIII CACNNNGTG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 187, 270
Eco47I GGWCC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 187, 270
ErhI CCWWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 6, 35, 232, 302
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 277
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 162, 242, 258
FriOI GRGCYC 2 cut(s) 187, 270
Fsp4HI GCNGC 3 cut(s) 162, 242, 258
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 162, 242, 258
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 164, 268, 283
HapII CCGG 2 cut(s) 216, 284
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HpaII CCGG 2 cut(s) 216, 284
HphI GGTGA 2 cut(s) 4, 40
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 2 cut(s) 121, 227
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 2 cut(s) 4, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 118
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 88, 144, 309
LmnI GCTCC 2 cut(s) 98, 218
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 159
MabI ACCWGGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 90, 146, 311
MboI GATC 3 cut(s) 88, 144, 309
MboII GAAGA 1 cut(s) 350
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 187, 270
MmeI TCCRAC 3 cut(s) 66, 76, 181
MnlI CCTC 4 cut(s) 97, 175, 247, 257
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 216, 284
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 35, 118
NdeII GATC 3 cut(s) 88, 144, 309
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 4 cut(s) 100, 214, 268, 346
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 163, 243, 259
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 4 cut(s) 100, 214, 268, 346
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 4 cut(s) 266, 267, 281, 344
PsuI RGATCY 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 155
SalI GTCGAC 1 cut(s) 115
SatI GCNGC 3 cut(s) 162, 242, 258
Sau3AI GATC 3 cut(s) 88, 144, 309
Sau96I GGNCC 4 cut(s) 266, 267, 281, 344
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 187, 270
SetI ASST 3 cut(s) 31, 130, 181
SexAI ACCWGGT 1 cut(s) 124
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 4 cut(s) 161, 242, 270, 317
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 2 cut(s) 24, 116
TauI GCSGC 2 cut(s) 164, 244
TscAI CASTG 2 cut(s) 175, 319
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 10
TspRI CASTG 2 cut(s) 175, 319
VpaK11BI GGWCC 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.