Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

6825786 .. 6826827

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTTTGGAAAGCCTTAGAGATGCAAATATTGCTGAATTCCAATGCTGGGAGTAGTGGGAATGGCGACAATGGGAAGTTAGTCCCTCAAACAAATGATACAGCAGGAGAAACAGGGGTGGACGAGCAAAACCAAAACCTGAACGAGGTCATTAAGTCTACCGAGAAAACATTAGCCCTCATTCACCAGCTCTACCTCACTGTCTCTTCATTCACTACAGGTTCTCAGCTCCCCCTCCTCGAGCGCCTAAATGCTCTTGCCATGGAGCTGGACAATACGGCTAAGTTGTCAGACAAATACAACTTCCAGGTTCCTATGGAGAGTTTACGAGAGCATCAACTGGAAGAACTTGACCAGGCATTTCCTATGAAGTTGAATCATATAGAGAAATACGTGCTGCTGCTTCGATATGCTGAAACGAAGCTTGCAGAAGGACAAAGCACATTGCCAAATGGAGATGTGAAGCATGAAGTAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

4.96

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	48, 145
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	306, 354
AluBI	AGCT	4 cut(s)	190, 229, 268, 424
AluI	AGCT	4 cut(s)	190, 229, 268, 424
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	397, 400
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	384, 387
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	2 cut(s)	308, 356
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	2 cut(s)	398, 401
BlsI	GCNGC	2 cut(s)	399, 402
Bme1390I	CCNGG	2 cut(s)	308, 356
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	308, 356
BmsI	GCATC	2 cut(s)	12, 343
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 145
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	308, 356
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	48, 145
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	384, 387
BseYI	CCCAGC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	48, 145
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	308, 356
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	16, 225, 282, 480
BstDSI	CCRYGG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	2 cut(s)	308, 356
BstSCI	CCNGG	2 cut(s)	306, 354
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	384, 387
BstXI	CCANNNNNNTGG	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	246
CviAII	CATG	2 cut(s)	262, 467
CviJI	RGCY	7 cut(s)	14, 176, 190, 229, 268, 281, 424
CviKI_1	RGCY	7 cut(s)	14, 176, 190, 229, 268, 281, 424
DdeI	CTNAG	4 cut(s)	16, 225, 282, 480
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	306, 354
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	265, 470
FaiI	YATR	7 cut(s)	263, 317, 368, 381, 383, 411, 468
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	261, 466
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	398, 401
Fsp4HI	GCNGC	2 cut(s)	398, 401
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	398, 401
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	247
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	265, 470
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	121, 159, 326
Hpy188I	TCNGA	1 cut(s)	292
Hpy8I	GTNNAC	3 cut(s)	121, 159, 326
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	25, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	4 cut(s)	16, 225, 282, 480
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	265, 470
HspAI	GCGC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	234, 265
Lsp1109I	GCAGC	2 cut(s)	384, 387
LweI	GCATC	2 cut(s)	12, 343
MaeII	ACGT	1 cut(s)	393
MboII	GAAGA	2 cut(s)	198, 356
MluCI	AATT	1 cut(s)	37
MnlI	CCTC	6 cut(s)	96, 139, 188, 206, 245, 248
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	308, 356
MvaI	CCWGG	2 cut(s)	308, 356
MwoI	GCNNNNNNNGC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	261
NlaIII	CATG	2 cut(s)	265, 470
NlaIV	GGNNCC	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	399, 402
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	306, 354
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	2 cut(s)	306, 354
PspN4I	GGNNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	398, 401
ScrFI	CCNGG	2 cut(s)	308, 356
SfaNI	GCATC	2 cut(s)	12, 343
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	37
SspI	AATATT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	306, 354
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	240, 406
TasI	AATT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	397, 400
TspDTI	ATGAA	3 cut(s)	198, 383, 483
TspRI	CASTG	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.