Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

16777691 .. 16779295

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATCAAACACAGAACACAATCGCCGGAATTGGTGAAATCAACGGTTCGATAAAAACCGAAATCAATGCAATTGCAACCGTCGACGATTCAAATGAGAAGCTGAACCAAATTATAAACTCGAATCAGAAAATTTTAGAACTCCTTCATCAATTAAAACTCACCGTCTCTTCTTTCACACCTGCTTCTCAGCTTCACCTCCTCCAACGCCTCAATTCTCTTGTGATGGAGCTTGATAATATGGCTAAGTTGTCTGATAAATGCAACATTCAAGTCCCCATTGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCAGATGAGTTTACAAAAGATGTTCTTAATAAGAACTGCATTGCTAAAAATCAAGTTACAAAGGGAAAGAGTGATGCTTTTAAGGGTTTGAGAAAACATCTCTTGGAGGAGCTTGAACAGGCTTTTCCTGATGAAGTCGATCGGTATAGAGACATACGTGCTAGTTATGCTGCTGAAGCAAAACGGTTGGCTCAAACGCAAAGTGTGTTACCAAATGGGGATGCTAAGGTCAAGAGTGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

5.45

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	43 - 155	6e-34	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	93, 272, 431
AluBI	AGCT	5 cut(s)	103, 193, 232, 427, 556
AluI	AGCT	5 cut(s)	103, 193, 232, 427, 556
Alw26I	GTCTC	2 cut(s)	172, 459
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	47, 154, 188
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	220, 299
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcoDI	GTCTC	2 cut(s)	172, 459
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmsI	GCATC	2 cut(s)	379, 526
Bpu10I	CCTNAGC	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	191, 437
BseXI	GCAGC	1 cut(s)	472
Bsh1285I	CGRYCG	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	172, 459
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	4, 454
BspCNI	CTCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	354
BssMI	GATC	2 cut(s)	4, 454
Bst4CI	ACNGT	4 cut(s)	47, 82, 166, 501
Bst6I	CTCTTC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	473
BstDEI	CTNAG	3 cut(s)	189, 246, 540
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	2 cut(s)	7, 457
BstMAI	GTCTC	2 cut(s)	172, 459
BstMBI	GATC	2 cut(s)	4, 454
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 491
BstV1I	GCAGC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	541
BveI	ACCTGC	1 cut(s)	190
CviJI	RGCY	8 cut(s)	103, 193, 232, 245, 427, 437, 506, 556
CviKI_1	RGCY	8 cut(s)	103, 193, 232, 245, 427, 437, 506, 556
DdeI	CTNAG	3 cut(s)	189, 246, 540
DpnI	GATC	2 cut(s)	6, 456
DpnII	GATC	2 cut(s)	4, 454
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	172
FaiI	YATR	6 cut(s)	116, 242, 462, 470, 483, 559
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	1 cut(s)	486
HapII	CCGG	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	89, 124
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	3 cut(s)	47, 154, 188
Hpy166II	GTNNAC	2 cut(s)	85, 327
Hpy188I	TCNGA	2 cut(s)	129, 256
Hpy188III	TCNNGA	2 cut(s)	443, 547
Hpy8I	GTNNAC	2 cut(s)	85, 327
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	4 cut(s)	47, 82, 166, 501
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	71, 77, 264, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 491
HpyF3I	CTNAG	3 cut(s)	189, 246, 540
HpySE526I	ACGT	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	4, 454
LmnI	GCTCC	2 cut(s)	229, 424
LpnPI	CCDG	5 cut(s)	40, 195, 330, 419, 456
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	379, 526
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	370, 522
MalI	GATC	2 cut(s)	6, 456
MboI	GATC	2 cut(s)	4, 454
MboII	GAAGA	2 cut(s)	162, 322
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	6 cut(s)	30, 72, 111, 132, 152, 214
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	209, 212, 221, 277, 415
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	4 cut(s)	155, 291, 342, 396
MspI	CCGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	482, 491
NdeII	GATC	2 cut(s)	4, 454
PaqCI	CACCTGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	89, 124
PkrI	GCNGC	1 cut(s)	487
Ple19I	CGATCG	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	155, 291, 342, 396
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	4, 454
SfaNI	GCATC	2 cut(s)	379, 526
SgrDI	CGTCGACG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	30, 72, 111, 132, 152, 214
SspMI	CTAG	1 cut(s)	477
TaaI	ACNGT	4 cut(s)	47, 82, 166, 501
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	50, 84, 122, 453
TasI	AATT	6 cut(s)	30, 72, 111, 132, 152, 214
TfiI	GAWTC	2 cut(s)	89, 124
Tru1I	TTAA	4 cut(s)	155, 291, 342, 396
Tru9I	TTAA	4 cut(s)	155, 291, 342, 396
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	137, 462
XapI	RAATTY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.