Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

15208851 .. 15213584

Gene Structure 4734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGCATGGGTCCGACATGGATGCATCGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAACGGAATAATGGTCCCTCAAACCAATGATACAGCAGGAACAGCAGGGGTGGATGATCCTAAGCAAGACCTGAACAAGGTCATTAACTCTATTCAGAAGACTTTAGGGCTCATTCACCAGCTCTACCTCACTGTGTCGTCGTTCAATGCTGGCTCTCAGCTCCCCCTCCTCCAGCGCCTAAATTCTCTTATTACGGAGCTTGACAATATGGCTAAGTTGTCTGACAAGTGCAACATCCAGATTCCTATGGAGGTCTTTAATTTGATTGATGACGGAAAGAATCCTGATGAATTTACGAGGGATGTCATAAACAGCTGTATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTGGACGAACTTGAGCAGGCATTTCCTGACGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCTGCTGCTGAAACAAAACGGCTTGCACAAGCACAAAGCTCATTGCCTAATGGAGATGTGAAGGTCAAACCTGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

197

Amino Acids

21.32

Weight (kDa)

5.22

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	52 - 165	6.5e-35	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	247, 356
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	211, 427, 485
AluBI	AGCT	5 cut(s)	187, 226, 265, 381, 549
AluI	AGCT	5 cut(s)	187, 226, 265, 381, 549
AlwI	GGATC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	506, 515
ApoI	RAATTY	2 cut(s)	247, 356
AspLEI	GCGC	2 cut(s)	243, 438
AspS9I	GGNCC	2 cut(s)	12, 79
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	12, 79
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	493, 502
BceAI	ACGGC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	2 cut(s)	507, 516
BlsI	GCNGC	2 cut(s)	508, 517
Bme18I	GGWCC	2 cut(s)	12, 79
BmgT120I	GGNCC	2 cut(s)	12, 79
BmiI	GGNNCC	2 cut(s)	13, 81
BmsI	GCATC	2 cut(s)	13, 35
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	4 cut(s)	28, 124, 300, 373
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	236, 573
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	493, 502
BseYI	CCCAGC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	121, 399
BspCNI	CTCAG	2 cut(s)	235, 574
BspDI	ATCGAT	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	13, 81
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	551
BssMI	GATC	2 cut(s)	121, 399
Bst4CI	ACNGT	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	217, 465, 534
BstDEI	CTNAG	4 cut(s)	126, 222, 279, 582
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	4 cut(s)	28, 124, 300, 373
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	243, 438
BstKTI	GATC	2 cut(s)	124, 402
BstMBI	GATC	2 cut(s)	121, 399
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 512, 515
BstV1I	GCAGC	2 cut(s)	493, 502
BstV2I	GAAGAC	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	28, 124, 300, 373
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	217, 465, 534
CfoI	GCGC	2 cut(s)	243, 438
Cfr13I	GGNCC	2 cut(s)	12, 79
ClaI	ATCGAT	1 cut(s)	29
CviAII	CATG	2 cut(s)	8, 19
CviJI	RGCY	9 cut(s)	175, 187, 219, 226, 265, 278, 381, 532, 549
CviKI_1	RGCY	9 cut(s)	175, 187, 219, 226, 265, 278, 381, 532, 549
DdeI	CTNAG	4 cut(s)	126, 222, 279, 582
DpnI	GATC	2 cut(s)	123, 401
DpnII	GATC	2 cut(s)	121, 399
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	12, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	11, 22
FaiI	YATR	7 cut(s)	9, 20, 275, 314, 374, 490, 492
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	7, 18
Fnu4HI	GCNGC	2 cut(s)	507, 516
FokI	GGATG	4 cut(s)	35, 131, 287, 380
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	507, 516
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	2 cut(s)	242, 437
GluI	GCNGC	2 cut(s)	507, 516
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	244
HhaI	GCGC	2 cut(s)	243, 438
Hin1II	CATG	2 cut(s)	11, 22
Hin6I	GCGC	2 cut(s)	241, 436
HinP1I	GCGC	2 cut(s)	241, 436
HinfI	GANTC	3 cut(s)	307, 346, 485
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	16, 162, 289, 399
Hpy188III	TCNNGA	5 cut(s)	304, 350, 427, 449, 473
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	433, 565
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	4 cut(s)	26, 38, 297, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 512, 515
HpyF3I	CTNAG	4 cut(s)	126, 222, 279, 582
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	11, 22
HspAI	GCGC	2 cut(s)	241, 436
Kzo9I	GATC	2 cut(s)	121, 399
LmnI	GCTCC	2 cut(s)	231, 262
Lsp1109I	GCAGC	2 cut(s)	493, 502
LweI	GCATC	2 cut(s)	13, 35
MaeII	ACGT	1 cut(s)	502
MalI	GATC	2 cut(s)	123, 401
MboI	GATC	2 cut(s)	121, 399
MboII	GAAGA	2 cut(s)	175, 437
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	247, 325, 356
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	6 cut(s)	93, 203, 242, 245, 310, 357
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	3 cut(s)	150, 324, 589
MspA1I	CMGCKG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	107, 512, 515
NdeII	GATC	2 cut(s)	121, 399
NlaIII	CATG	2 cut(s)	11, 22
NlaIV	GGNNCC	2 cut(s)	13, 81
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	307, 346, 485
PkrI	GCNGC	2 cut(s)	508, 517
Ppu21I	YACGTR	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	13, 81
PspPI	GGNCC	2 cut(s)	12, 79
PvuII	CAGCTG	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	150, 324, 589
SatI	GCNGC	2 cut(s)	507, 516
Sau3AI	GATC	2 cut(s)	121, 399
Sau96I	GGNCC	2 cut(s)	12, 79
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	13, 35
SinI	GGWCC	2 cut(s)	12, 79
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	247, 325, 356
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	247, 325, 356
TfiI	GAWTC	3 cut(s)	307, 346, 485
Tru1I	TTAA	3 cut(s)	150, 324, 589
Tru9I	TTAA	3 cut(s)	150, 324, 589
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	506, 515
TspDTI	ATGAA	3 cut(s)	17, 47, 369
TspGWI	ACGGA	3 cut(s)	84, 275, 354
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	12, 79
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	247, 356
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.