Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

20400304 .. 20410894

Gene Structure 10591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGGATAAATTGGTAGAAGCCTATGATGGGTTTGCTCGGAGCCAACATTCAGAGACCAATGAAGAAATTTATGGTGTACTGTCCTTTGTGTTGTGGACTCTTGCTCTAGTCCCTTTGGTCAAGTATGTCTTCATAGTCCTTAAGGCCGACGATAATGGACAGGAAGATGTAATCACCACTACTCGCGAAGGACAAAGATTAAGAAGCGTTAATCCACTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

75

Amino Acids

8.43

Weight (kDa)

4.72

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	14 - 56	3.9e-11	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflII	CTTAAG	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	124
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	50
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	149
BtuMI	TCGCGA	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	3 cut(s)	23, 45, 149
CviKI_1	RGCY	3 cut(s)	23, 45, 149
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	50
FaiI	YATR	4 cut(s)	27, 75, 129, 137
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	80, 99
Hpy188I	TCNGA	2 cut(s)	42, 55
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	80, 99
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	149
MaeI	CTAG	1 cut(s)	110
MboII	GAAGA	3 cut(s)	77, 124, 179
MluCI	AATT	2 cut(s)	11, 69
MlyI	GAGTC	1 cut(s)	94
MseI	TTAA	3 cut(s)	144, 203, 213
MspCI	CTTAAG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	44
NruI	TCGCGA	1 cut(s)	189
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	44
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	144, 203, 213
SchI	GAGTC	1 cut(s)	94
SgeI	CNNG	7 cut(s)	51, 116, 122, 136, 176, 198, 200
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	11, 69
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	84
TasI	AATT	2 cut(s)	11, 69
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	3 cut(s)	144, 203, 213
Tru9I	TTAA	3 cut(s)	144, 203, 213
TspDTI	ATGAA	2 cut(s)	78, 124
Vha464I	CTTAAG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.