Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

62507778 .. 62508724

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATACAGCAGGAGAACCAGGGGTGGATCGACGAGCAAAACCAAAACCTGAACGAGGTCATTAAGTCTACCGAGAAAACATTAGCCCTTATTCACCAACTCTACCTCACTGTCTCTTCATTCACTACCGGTTCTCAGCTCCCCCTCCTCGAGCGCCTAAATGCTCTTGCCATGGAGCTGGACAATATGGCTAAGTTGTCAGACAAATGCAATTTCCAAGTTCCTATGGAGGTTATTAAGGTCATGAACAGCTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTAAGAGAGCATCAACTGGAAGAACTTGACCAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTGCTTCTGTTGTAAGCTTTAATACCGTTCCATCTTATACAGGAAATGAAGCTTGCGGAAGGACAAAGCACATTGTGACATTGCCAAATGGAGATGTGAAGCACGAAGTCAAACCTGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

168

Amino Acids

18.84

Weight (kDa)

5.25

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	25 - 81	1.2e-06	Transcription factor subunit Med10 of Mediator complex
Med10	PF09748	81 - 122	1.8e-07	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	298, 356
AjnI	CCWGG	2 cut(s)	18, 333
AluBI	AGCT	5 cut(s)	139, 178, 252, 396, 431
AluI	AGCT	5 cut(s)	139, 178, 252, 396, 431
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	252, 377, 380
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	239, 364, 367
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	20, 335
BcoDI	GTCTC	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	3 cut(s)	253, 378, 381
BlsI	GCNGC	3 cut(s)	254, 379, 382
Bme1390I	CCNGG	2 cut(s)	20, 335
BmeT110I	CYCGRG	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	20, 335
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	19, 171
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	2 cut(s)	255, 458
BseBI	CCWGG	2 cut(s)	20, 335
BseDI	CCNNGG	2 cut(s)	19, 171
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	255, 458
BseMII	CTCAG	2 cut(s)	149, 486
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	239, 364, 367
BshTI	ACCGGT	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	27, 270
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	1 cut(s)	435
BspCNI	CTCAG	2 cut(s)	148, 487
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	255, 458
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	19, 171
BssMI	GATC	2 cut(s)	27, 270
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	20, 335
Bst4CI	ACNGT	2 cut(s)	112, 406
Bst6I	CTCTTC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	135, 192, 495
BstDSI	CCRYGG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	30, 273
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	27, 270
BstNI	CCWGG	2 cut(s)	20, 335
BstSCI	CCNGG	2 cut(s)	18, 333
BstV1I	GCAGC	3 cut(s)	239, 364, 367
BstXI	CCANNNNNNTGG	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	128
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	2 cut(s)	172, 244
CviJI	RGCY	8 cut(s)	86, 139, 178, 191, 252, 396, 431, 499
CviKI_1	RGCY	8 cut(s)	86, 139, 178, 191, 252, 396, 431, 499
DdeI	CTNAG	3 cut(s)	135, 192, 495
DpnI	GATC	2 cut(s)	29, 272
DpnII	GATC	2 cut(s)	27, 270
DraIII	CACNNNGTG	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	18, 333
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	175, 247
FaiI	YATR	7 cut(s)	173, 188, 227, 245, 361, 363, 417
FatI	CATG	2 cut(s)	171, 243
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	253, 378, 381
Fsp4HI	GCNGC	3 cut(s)	253, 378, 381
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	253, 378, 381
HaeII	RGCGCY	1 cut(s)	157
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	175, 247
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	394, 429
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	202, 270
Hpy188III	TCNNGA	3 cut(s)	244, 298, 344
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	304, 432
HpyCH4III	ACNGT	2 cut(s)	112, 406
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	210, 255
HpyF3I	CTNAG	3 cut(s)	135, 192, 495
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	175, 247
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	27, 270
LmnI	GCTCC	2 cut(s)	144, 175
Lsp1109I	GCAGC	3 cut(s)	239, 364, 367
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	29, 272
MboI	GATC	2 cut(s)	27, 270
MboII	GAAGA	2 cut(s)	108, 335
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	5 cut(s)	49, 116, 155, 158, 223
MseI	TTAA	5 cut(s)	63, 237, 305, 399, 502
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	20, 335
MvaI	CCWGG	2 cut(s)	20, 335
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	27, 270
NlaIII	CATG	2 cut(s)	175, 247
NmuCI	GTSAC	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	254, 379, 382
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	18, 333
PspGI	CCWGG	2 cut(s)	18, 333
PspXI	VCTCGAGB	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	63, 237, 305, 399, 502
SatI	GCNGC	3 cut(s)	253, 378, 381
Sau3AI	GATC	2 cut(s)	27, 270
ScrFI	CCNGG	2 cut(s)	20, 335
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	18, 333
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	112, 406
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	30, 150
TasI	AATT	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	5 cut(s)	63, 237, 305, 399, 502
Tru9I	TTAA	5 cut(s)	63, 237, 305, 399, 502
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	252, 377, 380
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	108, 260, 363, 441
TspRI	CASTG	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.