Rroxscaffold_2G00123680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001018
Physical Location & Seq
Reverse (-)
57554934 .. 57558532
3599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123680.1

Sequence Viewer

Length: 474 bp
ATGTCGCAGTACCTCAACACCTTCAGCGATGCTCTCCTTGTTTTGCTTCGCGAAGAGTTTTGTCGTTTCTTTAGACTAGCTAGCGGCATCAATCAATCGGTTCAGATGGACAAAGCTCGAGGATCATTAGCAAAGTTCAGCCATAGCTGTGCTCGGTCACTTGGTTATCGACTGAAGACAGCTCAAAGAGGATATACAGTACAGTACTACTACTATCGCTTCAAGATCGAGGTGGCAAGCCCTAGTTTTGAACTAGGGTTGACTTTGACCGGCCGATTTGGGCTTCGGGCTAGAGTTTCTTGGGGTTGCTTTCAATGGGCCATTACCGATGATCGGGCCTGTTTGTGGGGGCTCAACTTTGGAGAAGGGCTGCAGACCTTCAAGAATAGCCCAAGGAGCAACCTGTTTTCGAGGTTGTTGGCTACCGAGGAGGTTGAGGATGGTGTCGGTTCCAACCCTAAGGGAAGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.88

Weight (kDa)

9.47

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 271
AcuI CTGAAG 2 cut(s) 7, 194
AfaI GTAC 3 cut(s) 11, 201, 206
AfiI CCNNNNNNNGG 2 cut(s) 333, 345
AgsI TTSAA 4 cut(s) 223, 251, 314, 382
AluBI AGCT 4 cut(s) 80, 116, 147, 182
AluI AGCT 4 cut(s) 80, 116, 147, 182
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 3 cut(s) 271, 318, 336
ApeKI GCWGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 318, 336
AsuNHI GCTAGC 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 117
AxyI CCTNAGG 1 cut(s) 459
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 100, 434
BfaI CTAG 6 cut(s) 77, 81, 243, 254, 291, 472
BfmI CTRYAG 1 cut(s) 371
BisI GCNGC 2 cut(s) 85, 371
BlsI GCNGC 2 cut(s) 86, 372
BmcAI AGTACT 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 318, 336
BmiI GGNNCC 1 cut(s) 451
BmsI GCATC 2 cut(s) 19, 96
BmtI GCTAGC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 392, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 345
Bse118I RCCGGY 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 392, 426
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 333, 345
BseRI GAGGAG 1 cut(s) 443
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 3 cut(s) 273, 320, 338
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 333, 345
BsnI GGCC 3 cut(s) 273, 320, 338
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 154, 354
Bsp143I GATC 3 cut(s) 122, 225, 331
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 273, 320, 338
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 392, 426
BssMI GATC 3 cut(s) 122, 225, 331
BssT1I CCWWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 199, 204
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 82, 238
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 3 cut(s) 125, 228, 334
BstMBI GATC 3 cut(s) 122, 225, 331
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 371
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 182
BstZI CGGCCG 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 3 cut(s) 273, 320, 338
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 445
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 82, 238
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 318, 336
Csp6I GTAC 3 cut(s) 10, 200, 205
CviQI GTAC 3 cut(s) 10, 200, 205
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 124, 227, 333
DpnII GATC 3 cut(s) 122, 225, 331
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 7, 194
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 392
FaiI YATR 2 cut(s) 144, 195
Fnu4HI GCNGC 2 cut(s) 85, 371
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 85, 371
FspBI CTAG 6 cut(s) 77, 81, 243, 254, 291, 472
GluI GCNGC 2 cut(s) 85, 371
HaeIII GGCC 3 cut(s) 273, 320, 338
HapII CCGG 1 cut(s) 270
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 50, 223, 382
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 31, 359, 388, 459
HpyCH4III ACNGT 2 cut(s) 199, 204
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 1 cut(s) 459
Kzo9I GATC 3 cut(s) 122, 225, 331
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 3 cut(s) 283, 352, 416
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 2 cut(s) 19, 96
MaeI CTAG 6 cut(s) 77, 81, 243, 254, 291, 472
MaeIII GTNAC 1 cut(s) 156
MalI GATC 3 cut(s) 124, 227, 333
MboI GATC 3 cut(s) 122, 225, 331
MboII GAAGA 2 cut(s) 65, 187
MhlI GDGCHC 2 cut(s) 154, 354
MnlI CCTC 8 cut(s) 23, 113, 182, 223, 405, 421, 424, 430
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 396
NdeII GATC 3 cut(s) 122, 225, 331
NheI GCTAGC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 156
NruI TCGCGA 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 86, 372
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 318, 336
PspXI VCTCGAGB 1 cut(s) 117
PstI CTGCAG 1 cut(s) 375
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 3 cut(s) 11, 201, 206
RsaNI GTAC 3 cut(s) 10, 200, 205
RseI CAYNNNNRTG 1 cut(s) 147
SatI GCNGC 2 cut(s) 85, 371
Sau3AI GATC 3 cut(s) 122, 225, 331
Sau96I GGNCC 2 cut(s) 318, 336
ScaI AGTACT 1 cut(s) 206
SduI GDGCHC 2 cut(s) 154, 354
SfaNI GCATC 2 cut(s) 19, 96
SfcI CTRYAG 1 cut(s) 371
Sfr274I CTCGAG 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SsiI CCGC 1 cut(s) 84
SspMI CTAG 6 cut(s) 77, 81, 243, 254, 291, 472
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 199, 204
TaqI TCGA 4 cut(s) 118, 169, 228, 410
TaqII GACCGA 1 cut(s) 144
TatI WGTACW 2 cut(s) 199, 204
TauI GCSGC 1 cut(s) 87
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 117
XspI CTAG 6 cut(s) 77, 81, 243, 254, 291, 472
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.