Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

21993438 .. 21994179

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG130700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGGGCTATTTTGAGTTTGGCTGGTCCCAAATCTGGGACAAACGATTATCATGAGGTTGCTCAGAATGCCTTTTTGTCAAAGAGTTTACGAGAGCATCAACTGGAAGAACTTGACCAGGCATTTCCTAATGAAGTTGAATCATATAGAGAAATACGTGCTGCTGCTTCTGCTATAAGTTGCATTGCATTGATCACCCAATCTAGACTTTGCGCCCATCCTCGAAATGTTACACGAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

81

Amino Acids

8.94

Weight (kDa)

6.26

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	35, 36
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	161, 164
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	148, 151
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	192
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	162, 165
BlsI	GCNGC	2 cut(s)	163, 166
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 36
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	35, 36
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	148, 151
BslFI	GGGAC	2 cut(s)	12, 52
BslI	CCNNNNNNNGG	2 cut(s)	35, 36
BsmFI	GGGAC	2 cut(s)	12, 52
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 170
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	148, 151
BtsCI	GGATG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	2 cut(s)	8, 23
CviKI_1	RGCY	2 cut(s)	8, 23
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	54, 145, 147, 176
FaqI	GGGAC	2 cut(s)	12, 52
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	162, 165
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	162, 165
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	162, 165
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	2 cut(s)	53, 204
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	183, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 170
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	5 cut(s)	9, 21, 89, 104, 131
Lsp1109I	GCAGC	2 cut(s)	148, 151
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	1 cut(s)	119
MnlI	CCTC	2 cut(s)	49, 231
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	68, 170
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	163, 166
Ppu21I	YACGTR	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	26
SatI	GCNGC	2 cut(s)	162, 165
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	2 cut(s)	60, 160
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	161, 164
TspDTI	ATGAA	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	26
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.