Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

14014000 .. 14015256

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATACATCACAGAATGCAACAGCCGGAATCGGTGGGAGTGGTGGAAACGGAACGTTGGTCCCTCAAACCAATGATACAGCTGGACCGGCAGTGGTTGATGATCCAAAGCAAAACCTGAATCAGGTCATTAACTCTATTCAGAAAACCTTAGGCCTCATTCACCAGCTCTACCTCACCGTGTCTTCATTCAATGCTGCGTCTCAGCTCCCCATCCTCCAACGCCTAAATGCTCTTGTTATGGAGCTTGACAACATGGCTAAGCTATCAGAAAAATGCAATATCCAGGTGCCTATGGAAGTTTTTAATTTGATCGATGATGGGAAGAATCCTGATGAATTCACAAGGGATGTCATTAATGGCTGTATTGCCAAGAATCAGATCACGAAAGGAAAAACTGATACCTTCAAGAGTTTACGCAAACATCTCCTGGAGGAACTTGAACAAGCTTTTCCGGATGAAGTTGAATCTTACAGAGACATACGTGCTGCATCTGCTGCTGAAACAAAACGGCTTGCACAAGCACAGAGCACACTACCAAATGGAGATGTGAAGGTCAAGCCAGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

191

Amino Acids

20.65

Weight (kDa)

5.08

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	454
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	193, 409, 443, 467
AjnI	CCWGG	2 cut(s)	285, 429
AluBI	AGCT	7 cut(s)	83, 169, 208, 247, 265, 449, 568
AluI	AGCT	7 cut(s)	83, 169, 208, 247, 265, 449, 568
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	2 cut(s)	207, 471
AlwI	GGATC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	197, 488, 497
ApoI	RAATTY	1 cut(s)	338
AseI	ATTAAT	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	61, 86
AsuHPI	GGTGA	2 cut(s)	155, 169
AvaII	GGWCC	2 cut(s)	61, 86
AxyI	CCTNAGG	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	184, 475, 484
BccI	CCATC	2 cut(s)	221, 314
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	287, 431
BcoDI	GTCTC	2 cut(s)	207, 471
BisI	GCNGC	3 cut(s)	198, 489, 498
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	199, 490, 499
Bme1390I	CCNGG	2 cut(s)	287, 431
Bme18I	GGWCC	2 cut(s)	61, 86
BmgT120I	GGNCC	2 cut(s)	61, 86
BmiI	GGNNCC	2 cut(s)	63, 291
BmrFI	CCNGG	2 cut(s)	287, 431
BmsI	GCATC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	151
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	287, 431
BseCI	ATCGAT	1 cut(s)	315
BseGI	GGATG	3 cut(s)	213, 355, 463
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	184, 475, 484
BshFI	GGCC	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	27, 89, 455
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	207, 471
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	103, 312, 381
Bsp1720I	GCTNAGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	63, 291
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	3 cut(s)	103, 312, 381
Bst2UI	CCWGG	2 cut(s)	287, 431
Bst4CI	ACNGT	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	151, 204, 261
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	213, 355, 463
BstKTI	GATC	3 cut(s)	106, 315, 384
BstMAI	GTCTC	2 cut(s)	207, 471
BstMBI	GATC	3 cut(s)	103, 312, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 494, 497
BstNI	CCWGG	2 cut(s)	287, 431
BstSCI	CCNGG	2 cut(s)	285, 429
BstV1I	GCAGC	3 cut(s)	184, 475, 484
BstV2I	GAAGAC	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	213, 355, 463
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	61, 86
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	1 cut(s)	189
CviAII	CATG	1 cut(s)	256
DdeI	CTNAG	3 cut(s)	151, 204, 261
DpnI	GATC	3 cut(s)	105, 314, 383
DpnII	GATC	3 cut(s)	103, 312, 381
Eco147I	AGGCCT	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	61, 86
Eco81I	CCTNAGG	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	285, 429
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	242, 257, 296, 482
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	198, 489, 498
FokI	GGATG	3 cut(s)	200, 362, 470
Fsp4HI	GCNGC	3 cut(s)	198, 489, 498
GluI	GCNGC	3 cut(s)	198, 489, 498
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	3 cut(s)	27, 89, 455
HgaI	GACGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	30, 121, 328, 376, 467
HpaII	CCGG	3 cut(s)	27, 89, 455
HphI	GGTGA	2 cut(s)	155, 169
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	144, 271, 381
Hpy188III	TCNNGA	4 cut(s)	332, 385, 409, 455
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	415, 547
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	56, 484
HpyCH4V	TGCA	4 cut(s)	20, 279, 491, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 494, 497
HpyF3I	CTNAG	3 cut(s)	151, 204, 261
HpySE526I	ACGT	2 cut(s)	56, 484
Hsp92II	CATG	1 cut(s)	259
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	103, 312, 381
LmnI	GCTCC	2 cut(s)	213, 244
Lsp1109I	GCAGC	3 cut(s)	184, 475, 484
LweI	GCATC	1 cut(s)	500
MaeII	ACGT	2 cut(s)	56, 484
MalI	GATC	3 cut(s)	105, 314, 383
MboI	GATC	3 cut(s)	103, 312, 381
MboII	GAAGA	2 cut(s)	177, 337
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	2 cut(s)	307, 338
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	75, 167, 185, 227, 427
MroI	TCCGGA	1 cut(s)	454
MseI	TTAA	4 cut(s)	132, 306, 357, 571
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	27, 89, 455
MspR9I	CCNGG	2 cut(s)	287, 431
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	287, 431
MwoI	GCNNNNNNNGC	3 cut(s)	89, 494, 497
NdeII	GATC	3 cut(s)	103, 312, 381
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	63, 291
PceI	AGGCCT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	5 cut(s)	30, 121, 328, 376, 467
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	199, 490, 499
Ppu21I	YACGTR	1 cut(s)	485
PshBI	ATTAAT	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	285, 429
PspGI	CCWGG	2 cut(s)	285, 429
PspN4I	GGNNCC	2 cut(s)	63, 291
PspPI	GGNCC	2 cut(s)	61, 86
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	132, 306, 357, 571
SatI	GCNGC	3 cut(s)	198, 489, 498
Sau3AI	GATC	3 cut(s)	103, 312, 381
Sau96I	GGNCC	2 cut(s)	61, 86
ScrFI	CCNGG	2 cut(s)	287, 431
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	2 cut(s)	61, 86
Sse9I	AATT	2 cut(s)	307, 338
SseBI	AGGCCT	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	285, 429
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	59, 487
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	307, 338
TfiI	GAWTC	5 cut(s)	30, 121, 328, 376, 467
Tru1I	TTAA	4 cut(s)	132, 306, 357, 571
Tru9I	TTAA	4 cut(s)	132, 306, 357, 571
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	3 cut(s)	197, 488, 497
TspDTI	ATGAA	3 cut(s)	177, 351, 474
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	61, 86
VspI	ATTAAT	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.