Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

25841553 .. 25843839

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGCATCACAGAACACAACTGGAATCGGTGGGAGTGGCGGAAACGGAACATTGGTCCCTCAAACCAATGATACAACTGGATCGGCAGTGGTTGATGATCCAAAGCAAAACCTGAATCAGGTCATTAACTCTATTCAGAAAACTTTAGGCCTCGTTCACCAGCTCTACCTCACAGTGTCTTCGTTCAATGCCGCGTCTCAGCTTCCCCTCCTCCAACGCCTAAATGCCCTTGTTATGGAGCTTGACAACATGGCTAAGCTGTCAGAAAAATGCAATATCCAGGTTCCTATGGAAGTTTTTAATTTGATCGATGACGGGAAGAATCCTGATGAATTCACGAGGGATGTCATTAATAGCTGCATTGCTAAGAATCAGATCACTAAAGGAAAAACCGATACCTTCAAGAGTTTACGCAAACATCTTCTGGAGGAACTTGAACAGGCATTTCCAGATGAAGTTGAATCTTACAGAGACATACGTGCTGCATCTGCTGCTGAAACAAAACGGCTTGCACAAGCACAGAGCACACTACCAAATGGAGATGTGAAGGTCAAGCCGGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

5.08

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	45 - 158	8.4e-35	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	197
AciI	CCGC	2 cut(s)	42, 195
AclWI	GGATC	2 cut(s)	91, 95
AcsI	RAATTY	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	121, 238
AgsI	TTSAA	4 cut(s)	190, 406, 440, 464
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	6 cut(s)	166, 205, 244, 262, 360, 565
AluI	AGCT	6 cut(s)	166, 205, 244, 262, 360, 565
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	2 cut(s)	204, 468
AlwI	GGATC	2 cut(s)	91, 95
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	360, 485, 494
ApoI	RAATTY	1 cut(s)	335
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	3 cut(s)	347, 472, 481
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	204, 468
BisI	GCNGC	4 cut(s)	195, 361, 486, 495
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	4 cut(s)	196, 362, 487, 496
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	60, 288
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	17, 497
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 238
Bse1I	ACTGG	2 cut(s)	28, 85
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	312
BseGI	GGATG	2 cut(s)	10, 352
BseLI	CCNNNNNNNGG	2 cut(s)	121, 238
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	28, 85
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	347, 472, 481
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	121, 238
BsmAI	GTCTC	2 cut(s)	204, 468
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	4 cut(s)	83, 100, 309, 378
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	42, 195
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	60, 288
BspPI	GGATC	2 cut(s)	91, 95
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	28, 85
BssMI	GATC	4 cut(s)	83, 100, 309, 378
BssSI	CACGAG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	201, 258, 369
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	10, 352
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	4 cut(s)	86, 103, 312, 381
BstMAI	GTCTC	2 cut(s)	204, 468
BstMBI	GATC	4 cut(s)	83, 100, 309, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 494
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	347, 472, 481
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	10, 352
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 183
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	186
CviAII	CATG	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	201, 258, 369
DpnI	GATC	4 cut(s)	85, 102, 311, 380
DpnII	GATC	4 cut(s)	83, 100, 309, 378
EciI	GGCGGA	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	239, 254, 293, 479
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	195, 361, 486, 495
FokI	GGATG	2 cut(s)	17, 359
Fsp4HI	GCNGC	4 cut(s)	195, 361, 486, 495
GluI	GCNGC	4 cut(s)	195, 361, 486, 495
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	5 cut(s)	27, 118, 325, 373, 464
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	160, 413
Hpy188I	TCNGA	3 cut(s)	141, 268, 378
Hpy188III	TCNNGA	5 cut(s)	329, 340, 406, 428, 452
Hpy8I	GTNNAC	2 cut(s)	160, 413
HpyAV	CCTTC	2 cut(s)	412, 544
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	5 cut(s)	8, 276, 363, 488, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 494
HpyF3I	CTNAG	3 cut(s)	201, 258, 369
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	83, 100, 309, 378
LmnI	GCTCC	2 cut(s)	241, 562
Lsp1109I	GCAGC	3 cut(s)	347, 472, 481
LweI	GCATC	2 cut(s)	17, 497
MaeII	ACGT	1 cut(s)	481
MalI	GATC	4 cut(s)	85, 102, 311, 380
MboI	GATC	4 cut(s)	83, 100, 309, 378
MboII	GAAGA	3 cut(s)	174, 334, 416
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	2 cut(s)	304, 335
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	72, 164, 182, 221, 224, 336, 424
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	4 cut(s)	129, 303, 354, 568
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	491, 494
NdeII	GATC	4 cut(s)	83, 100, 309, 378
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	60, 288
NsiI	ATGCAT	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	153
PfeI	GAWTC	5 cut(s)	27, 118, 325, 373, 464
PkrI	GCNGC	4 cut(s)	196, 362, 487, 496
Ppu21I	YACGTR	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	60, 288
PspPI	GGNCC	1 cut(s)	58
SaqAI	TTAA	4 cut(s)	129, 303, 354, 568
SatI	GCNGC	4 cut(s)	195, 361, 486, 495
Sau3AI	GATC	4 cut(s)	83, 100, 309, 378
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	530
SfaNI	GCATC	2 cut(s)	17, 497
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	304, 335
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	42, 195
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	304, 335
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	5 cut(s)	27, 118, 325, 373, 464
Tru1I	TTAA	4 cut(s)	129, 303, 354, 568
Tru9I	TTAA	4 cut(s)	129, 303, 354, 568
TscAI	CASTG	2 cut(s)	96, 183
TseI	GCWGC	3 cut(s)	360, 485, 494
TspDTI	ATGAA	2 cut(s)	348, 471
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	96, 183
VpaK11BI	GGWCC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.