Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

67915987 .. 67916936

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGAGAGGGCCTCCGAAACTTGCGGAGAGACTTGGCAAGGCGAAATTCCAATTTCGTGATGGCGGCGGTGAGTCTCGTGCTCTCCAGACCATGCAAAGGCAAGATGGCGGCGGCTTGGGTGTGGAGAGGTCGCGGTCTCTTCTGCAACGGCGCTGGGCTCTCGATCGAGGTTCAAGAAAGCTCCGGTTGAGGCTGTTATCGGCTGAGGGTGGTGCTTTTCGACATGGTCTGGCAGATCATGTCGAAATGGTAATGTCGGTGTCGGAGCTTGCAGCGCTGCTTTGCGTTGTGTGGCAGCGTCAATTGATCACGTTTGGTGTCAGGTCTGGGCGGATGGAGGGGCTGATGGTGAAGTCGGGTCGAGATGCCATCGAGTCAGGCTGTAGTGTTGTGGGTTTGCAGCGATCGGTGATGGCGGCAACAGGGCCAAGACGGATCGCTATAGCATTAGCGGTGGCTCGGCCGGGGCTACGATTTTGCTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

11.36

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	136
AciI	CCGC	9 cut(s)	26, 66, 69, 111, 114, 136, 334, 419, 455
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	2 cut(s)	184, 271
AluI	AGCT	2 cut(s)	184, 271
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	3 cut(s)	25, 81, 144
AlwI	GGATC	1 cut(s)	446
Aor51HI	AGCGCT	1 cut(s)	279
AoxI	GGCC	3 cut(s)	11, 428, 464
ApeKI	GCWGC	5 cut(s)	275, 280, 298, 403, 483
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	156, 280
AspS9I	GGNCC	2 cut(s)	11, 428
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	83, 364, 424
BanII	GRGCYC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	267, 287, 310, 415, 470
BccI	CCATC	6 cut(s)	56, 101, 331, 343, 380, 409
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	1 cut(s)	465
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	25, 81, 144
BfmI	CTRYAG	2 cut(s)	385, 444
BfoI	RGCGCY	2 cut(s)	157, 281
BisI	GCNGC	9 cut(s)	67, 112, 115, 276, 281, 299, 404, 420, 484
BlsI	GCNGC	9 cut(s)	68, 113, 116, 277, 282, 300, 405, 421, 485
Bme1390I	CCNGG	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	11, 428
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	358
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	198
BseX3I	CGGCCG	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	267, 287, 310, 415, 470
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	136
Bsh1285I	CGRYCG	3 cut(s)	169, 410, 467
BshFI	GGCC	3 cut(s)	13, 430, 466
BsiEI	CGRYCG	3 cut(s)	169, 410, 467
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	187, 467
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	3 cut(s)	25, 81, 144
BsnI	GGCC	3 cut(s)	13, 430, 466
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	85, 163
Bsp143I	GATC	5 cut(s)	166, 238, 309, 407, 438
BspACI	CCGC	9 cut(s)	26, 66, 69, 111, 114, 136, 334, 419, 455
BspANI	GGCC	3 cut(s)	13, 430, 466
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	5 cut(s)	166, 238, 309, 407, 438
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	2 cut(s)	157, 281
BstHHI	GCGC	2 cut(s)	156, 280
BstKTI	GATC	5 cut(s)	169, 241, 312, 410, 441
BstMAI	GTCTC	3 cut(s)	25, 81, 144
BstMBI	GATC	5 cut(s)	166, 238, 309, 407, 438
BstMCI	CGRYCG	3 cut(s)	169, 410, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	2 cut(s)	385, 444
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	5 cut(s)	267, 287, 310, 415, 470
BstZI	CGGCCG	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	13, 430, 466
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	156, 280
Cfr13I	GGNCC	2 cut(s)	11, 428
CseI	GACGC	1 cut(s)	290
CviAII	CATG	3 cut(s)	94, 227, 242
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	5 cut(s)	168, 240, 311, 409, 440
DpnII	GATC	5 cut(s)	166, 238, 309, 407, 438
EaeI	YGGCCR	1 cut(s)	464
EagI	CGGCCG	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	349
EclXI	CGGCCG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	144
Eco47III	AGCGCT	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	3 cut(s)	97, 230, 245
FaiI	YATR	4 cut(s)	95, 228, 243, 446
FatI	CATG	3 cut(s)	93, 226, 241
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	9 cut(s)	67, 112, 115, 276, 281, 299, 404, 420, 484
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	9 cut(s)	67, 112, 115, 276, 281, 299, 404, 420, 484
GlaI	GCGC	2 cut(s)	155, 279
GluI	GCNGC	9 cut(s)	67, 112, 115, 276, 281, 299, 404, 420, 484
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	2 cut(s)	157, 281
HaeIII	GGCC	3 cut(s)	13, 430, 466
HapII	CCGG	2 cut(s)	187, 467
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	156, 280
Hin1II	CATG	3 cut(s)	97, 230, 245
Hin6I	GCGC	2 cut(s)	154, 278
HinP1I	GCGC	2 cut(s)	154, 278
HinfI	GANTC	2 cut(s)	74, 377
HpaII	CCGG	2 cut(s)	187, 467
HphI	GGTGA	3 cut(s)	83, 364, 424
Hpy188I	TCNGA	2 cut(s)	18, 268
Hpy188III	TCNNGA	5 cut(s)	59, 88, 164, 177, 365
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	4 cut(s)	97, 148, 275, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	97, 230, 245
HspAI	GCGC	2 cut(s)	154, 278
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	166, 238, 309, 407, 438
LmnI	GCTCC	2 cut(s)	189, 268
LpnPI	CCDG	9 cut(s)	101, 142, 200, 218, 310, 315, 366, 411, 480
Lsp1109I	GCAGC	5 cut(s)	267, 287, 310, 415, 470
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	314
MalI	GATC	5 cut(s)	168, 240, 311, 409, 440
MboI	GATC	5 cut(s)	166, 238, 309, 407, 438
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	85, 163
MluCI	AATT	3 cut(s)	47, 53, 305
MlyI	GAGTC	2 cut(s)	83, 386
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	24, 123, 164, 186, 202, 334
MspI	CCGG	2 cut(s)	187, 467
MspR9I	CCNGG	1 cut(s)	468
MunI	CAATTG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	166, 238, 309, 407, 438
NlaIII	CATG	3 cut(s)	97, 230, 245
NmeAIII	GCCGAG	1 cut(s)	442
PflFI	GACNNNGTC	1 cut(s)	228
PkrI	GCNGC	9 cut(s)	68, 113, 116, 277, 282, 300, 405, 421, 485
Ple19I	CGATCG	2 cut(s)	169, 410
PleI	GAGTC	2 cut(s)	82, 385
PpsI	GAGTC	2 cut(s)	82, 385
PspFI	CCCAGC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	11, 428
PsyI	GACNNNGTC	1 cut(s)	228
PvuI	CGATCG	2 cut(s)	169, 410
SatI	GCNGC	9 cut(s)	67, 112, 115, 276, 281, 299, 404, 420, 484
Sau3AI	GATC	5 cut(s)	166, 238, 309, 407, 438
Sau96I	GGNCC	2 cut(s)	11, 428
SchI	GAGTC	2 cut(s)	83, 386
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	85, 163
SetI	ASST	6 cut(s)	134, 175, 186, 273, 317, 329
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	385, 444
Sse9I	AATT	3 cut(s)	47, 53, 305
SsiI	CCGC	9 cut(s)	26, 66, 69, 111, 114, 136, 334, 419, 455
StyD4I	CCNGG	1 cut(s)	466
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	6 cut(s)	165, 169, 223, 246, 364, 375
TasI	AATT	3 cut(s)	47, 53, 305
TauI	GCSGC	4 cut(s)	69, 114, 117, 422
TseI	GCWGC	5 cut(s)	275, 280, 298, 403, 483
TspGWI	ACGGA	1 cut(s)	451
Tth111I	GACNNNGTC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.