Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

16999905 .. 17008784

Gene Structure 8880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGACAGAGCAACTTCACCACCGCGACCGCAACAACGAGCAAACCAACTCACACCAGGTGGGTGCCAATATAATAAACAACTGCCAGCGTGGATCTATCGTATCACATCATCCCAGCCCATCTTTTCTTCTGCTATTTCCAATCAAAACCCGTTTCAGAGAGAGTTGAGCAGACAAGCCAATTCGGATTTGAGTTTCGAATCTCAAAACTCTTGCTTGCTTCTCAGACCATCATCGCCATTGTTGAAGATCCACCTCCCAGGTCCACTTCCCTTCCCTCTAACTCGTTGGTCTGAGATGGATGCATCGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAATGGGATATTGGTCCCTCAAACCAATGATACAGCAGGAACAACAGGGGTGGATGATCCAAAGCAAGACCTGAACCAGGTCATTAACTCTATTCAGAAGACTTTAGGGCTCATTCACCAGCTCTACCTCACTGTCTCTTCGTTCAATGCCGGCTCTCAGCTCCCCCTCCTCCAGCGCCTAAATGCTCTTGTTATGGAGCTTGACAATATGGCTAAGTTGTCTGACAAATGCAATATCCAGGTTCCTATGGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGCTGTATCGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTCGACGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCAGCTGCTGAAATGAAACGACTTGCACAAGCACAAAGCACATTGCCAAATGGAGATGTGAAGGTCAAACCCGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

289

Amino Acids

31.89

Weight (kDa)

6.33

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	145 - 258	4.1e-34	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	63
AccII	CGCG	1 cut(s)	25
AciI	CCGC	2 cut(s)	23, 29
AclWI	GGATC	3 cut(s)	101, 244, 395
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	774
AdeI	CACNNNGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	5 cut(s)	247, 490, 706, 740, 764
AjnI	CCWGG	4 cut(s)	55, 259, 420, 582
AluBI	AGCT	5 cut(s)	466, 505, 544, 660, 794
AluI	AGCT	5 cut(s)	466, 505, 544, 660, 794
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	101, 244, 395
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	860
ApeKI	GCWGC	2 cut(s)	785, 794
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	522, 717
AspS9I	GGNCC	2 cut(s)	263, 358
AsuHPI	GGTGA	2 cut(s)	9, 452
AsuII	TTCGAA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	2 cut(s)	263, 358
BaeI	ACNNNNGTAYC	2 cut(s)	646, 679
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	772, 781
BccI	CCATC	4 cut(s)	128, 238, 292, 611
BciT130I	CCWGG	4 cut(s)	57, 261, 422, 584
BcoDI	GTCTC	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	523
BisI	GCNGC	2 cut(s)	786, 795
BlsI	GCNGC	2 cut(s)	787, 796
Bme1390I	CCNGG	4 cut(s)	57, 261, 422, 584
Bme18I	GGWCC	2 cut(s)	263, 358
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	2 cut(s)	263, 358
BmiI	GGNNCC	3 cut(s)	65, 360, 588
BmrFI	CCNGG	4 cut(s)	57, 261, 422, 584
BmsI	GCATC	2 cut(s)	292, 314
BpiI	GAAGAC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	494
Bse3DI	GCAATG	2 cut(s)	352, 830
BseBI	CCWGG	4 cut(s)	57, 261, 422, 584
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	4 cut(s)	110, 307, 403, 652
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	2 cut(s)	352, 830
BseMII	CTCAG	3 cut(s)	238, 285, 515
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	772, 781
BseYI	CCCAGC	2 cut(s)	114, 323
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	63
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	860
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	93, 249, 400, 678
BspACI	CCGC	2 cut(s)	23, 29
BspCNI	CTCAG	3 cut(s)	237, 286, 514
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	65, 360, 588
BspPI	GGATC	3 cut(s)	101, 244, 395
BspT104I	TTCGAA	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	352, 830
BsrFI	RCCGGY	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	93, 249, 400, 678
Bst2UI	CCWGG	4 cut(s)	57, 261, 422, 584
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	782
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	87, 218, 496
BstDEI	CTNAG	4 cut(s)	224, 294, 501, 558
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	4 cut(s)	110, 307, 403, 652
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	2 cut(s)	522, 717
BstKTI	GATC	4 cut(s)	96, 252, 403, 681
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	93, 249, 400, 678
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 794
BstNI	CCWGG	4 cut(s)	57, 261, 422, 584
BstSCI	CCNGG	4 cut(s)	55, 259, 420, 582
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	772, 781
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	2 cut(s)	93, 249
BstYI	RGATCY	2 cut(s)	93, 249
Bsu15I	ATCGAT	1 cut(s)	308
BsuTUI	ATCGAT	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	110, 307, 403, 652
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	3 cut(s)	87, 218, 496
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	2 cut(s)	522, 717
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	263, 358
ClaI	ATCGAT	1 cut(s)	308
CsiI	ACCWGGT	2 cut(s)	55, 420
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
DdeI	CTNAG	4 cut(s)	224, 294, 501, 558
DpnI	GATC	4 cut(s)	95, 251, 402, 680
DpnII	GATC	4 cut(s)	93, 249, 400, 678
DraIII	CACNNNGTG	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	263, 358
Eco57I	CTGAAG	1 cut(s)	774
Eco88I	CYCGRG	1 cut(s)	860
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	4 cut(s)	55, 259, 420, 582
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	456
FaiI	YATR	7 cut(s)	72, 539, 554, 593, 653, 769, 771
FaqI	GGGAC	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	786, 795
FokI	GGATG	4 cut(s)	97, 314, 410, 659
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	786, 795
FspI	TGCGCA	1 cut(s)	716
GlaI	GCGC	2 cut(s)	521, 716
GluI	GCNGC	2 cut(s)	786, 795
GsaI	CCCAGC	2 cut(s)	118, 327
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	523
HapII	CCGG	1 cut(s)	495
HhaI	GCGC	2 cut(s)	522, 717
Hin6I	GCGC	2 cut(s)	520, 715
HinP1I	GCGC	2 cut(s)	520, 715
HinfI	GANTC	3 cut(s)	200, 625, 764
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	9, 452
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	7 cut(s)	159, 187, 227, 295, 441, 568, 678
Hpy188III	TCNNGA	4 cut(s)	629, 706, 728, 752
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	3 cut(s)	283, 712, 844
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	4 cut(s)	305, 317, 576, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 794
HpyF3I	CTNAG	4 cut(s)	224, 294, 501, 558
HpySE526I	ACGT	1 cut(s)	781
HspAI	GCGC	2 cut(s)	520, 715
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	93, 249, 400, 678
LmnI	GCTCC	2 cut(s)	510, 541
Lsp1109I	GCAGC	2 cut(s)	772, 781
LweI	GCATC	2 cut(s)	292, 314
MabI	ACCWGGT	2 cut(s)	55, 420
MaeII	ACGT	1 cut(s)	781
MalI	GATC	4 cut(s)	95, 251, 402, 680
MboI	GATC	4 cut(s)	93, 249, 400, 678
MboII	GAAGA	5 cut(s)	120, 259, 454, 474, 716
MflI	RGATCY	2 cut(s)	93, 249
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	3 cut(s)	181, 604, 635
MnlI	CCTC	7 cut(s)	266, 288, 372, 482, 521, 524, 589
Mph1103I	ATGCAT	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	494
MseI	TTAA	3 cut(s)	429, 603, 868
MspA1I	CMGCKG	2 cut(s)	660, 794
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	4 cut(s)	57, 261, 422, 584
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	4 cut(s)	57, 261, 422, 584
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	791, 794
NaeI	GCCGGC	1 cut(s)	496
NdeII	GATC	4 cut(s)	93, 249, 400, 678
NgoMIV	GCCGGC	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	65, 360, 588
NsbI	TGCGCA	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	198
PctI	GAATGC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	200, 625, 764
PkrI	GCNGC	2 cut(s)	787, 796
Ppu21I	YACGTR	1 cut(s)	782
Psp6I	CCWGG	4 cut(s)	55, 259, 420, 582
PspFI	CCCAGC	2 cut(s)	114, 323
PspGI	CCWGG	4 cut(s)	55, 259, 420, 582
PspN4I	GGNNCC	3 cut(s)	65, 360, 588
PspPI	GGNCC	2 cut(s)	263, 358
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	93, 249
PvuII	CAGCTG	2 cut(s)	660, 794
SaqAI	TTAA	3 cut(s)	429, 603, 868
SatI	GCNGC	2 cut(s)	786, 795
Sau3AI	GATC	4 cut(s)	93, 249, 400, 678
Sau96I	GGNCC	2 cut(s)	263, 358
ScrFI	CCNGG	4 cut(s)	57, 261, 422, 584
SduI	GDGCHC	1 cut(s)	456
SexAI	ACCWGGT	2 cut(s)	55, 420
SfaNI	GCATC	2 cut(s)	292, 314
SfuI	TTCGAA	1 cut(s)	198
SinI	GGWCC	2 cut(s)	263, 358
Sse9I	AATT	3 cut(s)	181, 604, 635
SsiI	CCGC	2 cut(s)	23, 29
StyD4I	CCNGG	4 cut(s)	55, 259, 420, 582
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	3 cut(s)	198, 308, 729
TasI	AATT	3 cut(s)	181, 604, 635
TfiI	GAWTC	3 cut(s)	200, 625, 764
Tru1I	TTAA	3 cut(s)	429, 603, 868
Tru9I	TTAA	3 cut(s)	429, 603, 868
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	2 cut(s)	785, 794
TspDTI	ATGAA	4 cut(s)	326, 648, 771, 818
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	263, 358
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	635
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.