Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

29677747 .. 29679896

Gene Structure 2150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATGCATCGATGAATGCAAATGCTGGGATTGGCGGGAGTGGCGGCAATGGGATATTGGTCCATCAAACCAATGATACAGCAGGAACAACAGGGGTGGATGATCCAAAGCAAGACCTGAACCAGGTCATTAACTCTATTCAGAAGACTTTAGGGCTAATTCACCAGCTCTACCTCACTGTCTCTTCGTTCAATGCCGGCTCGCAGCTCCCTCTCCTCCAGCGCCTAAATGCTCTTGTTATGGAGCTTGACAATATGGCTAAGTTGTCTGACAAATGCAATATCCAGGTTCCTATGGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGTTGTATCGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTCGACGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCAGCTGCTGAAACGAAACGGCTTGCACAAGCACAAAGCACTTTGCCAAATGGAGATGTGAAGGTCAAACCCGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

190

Amino Acids

20.72

Weight (kDa)

5.06

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	46 - 159	1.3e-34	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
AciI	CCGC	2 cut(s)	36, 45
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	193, 409, 443, 467
AjnI	CCWGG	2 cut(s)	123, 285
AluBI	AGCT	4 cut(s)	169, 208, 247, 497
AluI	AGCT	4 cut(s)	169, 208, 247, 497
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	563
ApeKI	GCWGC	3 cut(s)	205, 488, 497
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	225, 420
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	349, 382
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	217, 475, 484
BccI	CCATC	2 cut(s)	72, 314
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	125, 287
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	4 cut(s)	46, 206, 489, 498
BlsI	GCNGC	4 cut(s)	47, 207, 490, 499
Bme1390I	CCNGG	2 cut(s)	125, 287
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	125, 287
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	125, 287
BseCI	ATCGAT	1 cut(s)	11
BseGI	GGATG	3 cut(s)	10, 106, 355
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	217, 475, 484
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	103, 381
BspACI	CCGC	2 cut(s)	36, 45
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	2 cut(s)	103, 381
Bst2UI	CCWGG	2 cut(s)	125, 287
Bst4CI	ACNGT	2 cut(s)	181, 362
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	199, 203, 516
BstDEI	CTNAG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	10, 106, 355
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 420
BstKTI	GATC	2 cut(s)	106, 384
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	103, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 494, 497
BstNI	CCWGG	2 cut(s)	125, 287
BstSCI	CCNGG	2 cut(s)	123, 285
BstV1I	GCAGC	3 cut(s)	217, 475, 484
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	10, 106, 355
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	199, 203, 516
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	2 cut(s)	225, 420
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviJI	RGCY	8 cut(s)	157, 169, 201, 208, 247, 260, 497, 514
CviKI_1	RGCY	8 cut(s)	157, 169, 201, 208, 247, 260, 497, 514
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	105, 383
DpnII	GATC	2 cut(s)	103, 381
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	123, 285
EcoT22I	ATGCAT	1 cut(s)	10
FaiI	YATR	6 cut(s)	242, 257, 296, 356, 472, 474
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	46, 206, 489, 498
FokI	GGATG	3 cut(s)	17, 113, 362
Fsp4HI	GCNGC	4 cut(s)	46, 206, 489, 498
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	2 cut(s)	224, 419
GluI	GCNGC	4 cut(s)	46, 206, 489, 498
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	2 cut(s)	225, 420
Hin6I	GCGC	2 cut(s)	223, 418
HinP1I	GCGC	2 cut(s)	223, 418
HinfI	GANTC	2 cut(s)	328, 467
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	144, 271, 381
Hpy188III	TCNNGA	4 cut(s)	332, 409, 431, 455
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	415, 547
HpyCH4III	ACNGT	2 cut(s)	181, 362
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	8, 20, 279, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 494, 497
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	484
HspAI	GCGC	2 cut(s)	223, 418
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	103, 381
LmnI	GCTCC	2 cut(s)	213, 244
Lsp1109I	GCAGC	3 cut(s)	217, 475, 484
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	123
MaeII	ACGT	1 cut(s)	484
MalI	GATC	2 cut(s)	105, 383
MboI	GATC	2 cut(s)	103, 381
MboII	GAAGA	3 cut(s)	157, 177, 419
MluCI	AATT	3 cut(s)	159, 307, 338
MnlI	CCTC	4 cut(s)	185, 222, 227, 292
Mph1103I	ATGCAT	1 cut(s)	10
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	3 cut(s)	132, 306, 571
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	125, 287
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	125, 287
MwoI	GCNNNNNNNGC	3 cut(s)	42, 494, 497
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	103, 381
NgoMIV	GCCGGC	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	291
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	328, 467
PkrI	GCNGC	4 cut(s)	47, 207, 490, 499
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	123, 285
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	123, 285
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	132, 306, 571
SatI	GCNGC	4 cut(s)	46, 206, 489, 498
Sau3AI	GATC	2 cut(s)	103, 381
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	125, 287
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	159, 307, 338
SsiI	CCGC	2 cut(s)	36, 45
StyD4I	CCNGG	2 cut(s)	123, 285
TaaI	ACNGT	2 cut(s)	181, 362
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	11, 432
TasI	AATT	3 cut(s)	159, 307, 338
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	328, 467
Tru1I	TTAA	3 cut(s)	132, 306, 571
Tru9I	TTAA	3 cut(s)	132, 306, 571
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	205, 488, 497
TspDTI	ATGAA	3 cut(s)	29, 351, 474
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.