Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

28527497 .. 28528343

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013244

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGAGGGCCTGCGAAACTTACGGAGCGACCCGAGCAGGCGAAACCTAGGTTCCGCGACGGTGGCGGAGAGCATCGTGTTCTCCAGACCAGACAGAGGCAGGTGGACGGCGGCGTGGGCTTGGAGAGGCCATGGTCTCTTCAGCAACGGCACTGGAACCTTGACCAAGTTTTTAAAAGGCTCTGGTTGAGTCAAGGCTCGACTGAGGGTGGTTTTCCAAATGTCGATGGCCAGATCGGGTCGAAGCCATGGCGGTGGTATCGAAGCAGGCAGATTTCTGAGCAACTAGGATCTGCGTTGGTATGGCGGCGTCAGCGAACTGAGATTAGGCTCAAGTCGGGGCTACTGGGGAGGTCGATGGCTTCGGGTTCTGTGATTGTGCTGCATTTCTTGGAGGCGGCAGGAGGGCCGGCGATGACTGAGCCGGTCACTGTACTGGAGATCAGTGAAGCGCTTCTGGGGCAAAGACTGGGCCTAGGGCAGGCAACGGGCCAAAGGCAGGGACTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

11.29

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AccII	CGCG	1 cut(s)	57
AciI	CCGC	6 cut(s)	55, 66, 111, 253, 307, 398
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	1 cut(s)	435
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	96, 481, 499
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	32
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	6 cut(s)	8, 128, 229, 407, 472, 490
ApeKI	GCWGC	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	453
AspA2I	CCTAGG	2 cut(s)	47, 475
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	4 cut(s)	8, 407, 472, 490
AvaI	CYCGRG	1 cut(s)	32
AvrII	CCTAGG	2 cut(s)	47, 475
BalI	TGGCCA	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	2 cut(s)	221, 352
BceAI	ACGGC	2 cut(s)	124, 164
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	3 cut(s)	48, 287, 476
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	112, 308, 383, 399
BlnI	CCTAGG	2 cut(s)	47, 475
BlsI	GCNGC	4 cut(s)	113, 309, 384, 400
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	4 cut(s)	8, 407, 472, 490
BmiI	GGNNCC	2 cut(s)	53, 158
BmrI	ACTGGG	2 cut(s)	356, 479
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	2 cut(s)	356, 479
BpmI	CTGGAG	2 cut(s)	68, 458
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	47, 131, 248, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 481, 499
Bse118I	RCCGGY	2 cut(s)	409, 424
Bse1I	ACTGG	5 cut(s)	158, 351, 441, 474, 510
BseDI	CCNNGG	4 cut(s)	47, 131, 248, 475
BseLI	CCNNNNNNNGG	3 cut(s)	96, 481, 499
BseMII	CTCAG	4 cut(s)	195, 270, 312, 411
BseNI	ACTGG	5 cut(s)	158, 351, 441, 474, 510
BseXI	GCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	10, 130, 231, 409, 474, 492
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	410, 425
BslI	CCNNNNNNNGG	3 cut(s)	96, 481, 499
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	6 cut(s)	10, 130, 231, 409, 474, 492
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	234, 290, 441
Bsp19I	CCATGG	2 cut(s)	131, 248
BspACI	CCGC	6 cut(s)	55, 66, 111, 253, 307, 398
BspANI	GGCC	6 cut(s)	10, 130, 231, 409, 474, 492
BspCNI	CTCAG	4 cut(s)	196, 271, 313, 412
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	53, 158
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	141
BsrFI	RCCGGY	2 cut(s)	409, 424
BsrI	ACTGG	5 cut(s)	158, 351, 441, 474, 510
BssAI	RCCGGY	2 cut(s)	409, 424
BssECI	CCNNGG	4 cut(s)	47, 131, 248, 475
BssMI	GATC	3 cut(s)	234, 290, 441
BssNI	GRCGYC	1 cut(s)	310
BssT1I	CCWWGG	4 cut(s)	47, 131, 248, 475
Bst4CI	ACNGT	2 cut(s)	62, 433
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	310
BstC8I	GCNNGC	5 cut(s)	12, 39, 269, 411, 483
BstDEI	CTNAG	4 cut(s)	204, 279, 321, 420
BstDSI	CCRYGG	2 cut(s)	131, 248
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	3 cut(s)	237, 293, 444
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	234, 290, 441
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 63, 117, 313, 460
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	6 cut(s)	10, 130, 231, 409, 474, 492
BtgI	CCRYGG	2 cut(s)	131, 248
BtgZI	GCGATG	1 cut(s)	428
BtsIMutI	CAGTG	3 cut(s)	151, 429, 451
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	5 cut(s)	12, 39, 269, 411, 483
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	2 cut(s)	409, 424
Cfr13I	GGNCC	4 cut(s)	8, 407, 472, 490
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	2 cut(s)	132, 249
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	204, 279, 321, 420
DpnI	GATC	3 cut(s)	236, 292, 443
DpnII	GATC	3 cut(s)	234, 290, 441
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	4 cut(s)	47, 131, 248, 475
Eco31I	GGTCTC	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT14I	CCWWGG	4 cut(s)	47, 131, 248, 475
ErhI	CCWWGG	4 cut(s)	47, 131, 248, 475
FaeI	CATG	2 cut(s)	135, 252
FaiI	YATR	3 cut(s)	133, 250, 304
FatI	CATG	2 cut(s)	131, 248
Fnu4HI	GCNGC	4 cut(s)	112, 308, 383, 399
Fsp4HI	GCNGC	4 cut(s)	112, 308, 383, 399
FspBI	CTAG	3 cut(s)	48, 287, 476
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	4 cut(s)	112, 308, 383, 399
GsuI	CTGGAG	2 cut(s)	68, 458
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	6 cut(s)	10, 130, 231, 409, 474, 492
HapII	CCGG	2 cut(s)	410, 425
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	135, 252
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	410, 425
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	62, 433
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 63, 117, 313, 460
HpyF3I	CTNAG	4 cut(s)	204, 279, 321, 420
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	135, 252
HspAI	GCGC	1 cut(s)	452
KroI	GCCGGC	1 cut(s)	409
KroNI	GCCGGC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	234, 290, 441
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	3 cut(s)	48, 287, 476
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	3 cut(s)	236, 292, 443
MboI	GATC	3 cut(s)	234, 290, 441
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	90, 120, 199, 345, 388, 398
Mox20I	TGGCCA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	253
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	2 cut(s)	410, 425
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	34, 63, 117, 313, 460
NaeI	GCCGGC	1 cut(s)	411
NcoI	CCATGG	2 cut(s)	131, 248
NdeII	GATC	3 cut(s)	234, 290, 441
NgoMIV	GCCGGC	1 cut(s)	409
NlaIII	CATG	2 cut(s)	135, 252
NlaIV	GGNNCC	2 cut(s)	53, 158
NmuCI	GTSAC	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	113, 309, 384, 400
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	53, 158
PspPI	GGNCC	4 cut(s)	8, 407, 472, 490
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	112, 308, 383, 399
Sau3AI	GATC	3 cut(s)	234, 290, 441
Sau96I	GGNCC	4 cut(s)	8, 407, 472, 490
SchI	GAGTC	1 cut(s)	199
SetI	ASST	5 cut(s)	49, 53, 105, 162, 356
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	6 cut(s)	55, 66, 111, 253, 307, 398
SspMI	CTAG	3 cut(s)	48, 287, 476
StyI	CCWWGG	4 cut(s)	47, 131, 248, 475
TaaI	ACNGT	2 cut(s)	62, 433
TaqI	TCGA	5 cut(s)	200, 225, 242, 262, 356
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	3 cut(s)	114, 310, 401
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	3 cut(s)	158, 436, 451
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	427
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	158, 436, 451
XagI	CCTNNNNNAGG	1 cut(s)	479
XmaJI	CCTAGG	2 cut(s)	47, 475
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	3 cut(s)	48, 287, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.