Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

14588972 .. 14590670

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGCTGGACAATATGGCTAACTTGTCAGACAACTGCAATTTCCAGATTCCTATGGAGGTTATTAAGTTGATCGACGATGGAAAGAATCCTGATTTACTTACAAGGGATCTCATAAACAACTGCAATGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTACGAGAGCATCAACTGGAAGAACTTGACCAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTCCTGCTGCTTCTGCTATAAGTTGCATTGCATTGATCACCCAATCTAGACTTTGCGCCCATCCTCGAAATGTTACACGAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

110

Amino Acids

12.52

Weight (kDa)

5.1

Isoelectric Point (pI)

18.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	2 - 79	5e-24	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	169, 227
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	274
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	74, 312
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	133, 270
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	133, 270
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	72, 109, 141, 279
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	133, 270
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	72, 109, 141, 279
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	75, 112, 144, 282
BstMBI	GATC	4 cut(s)	72, 109, 141, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	302
CviJI	RGCY	2 cut(s)	7, 20
CviKI_1	RGCY	2 cut(s)	7, 20
DpnI	GATC	4 cut(s)	74, 111, 143, 281
DpnII	GATC	4 cut(s)	72, 109, 141, 279
EcoRII	CCWGG	1 cut(s)	204
FaiI	YATR	6 cut(s)	17, 56, 116, 232, 234, 263
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	49, 88, 227
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	31, 141
Hpy188III	TCNNGA	5 cut(s)	46, 92, 169, 215, 291
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	39, 126, 270, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	244
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	72, 109, 141, 279
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	59, 105, 176, 191, 218, 228, 261
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	4 cut(s)	74, 111, 143, 281
MboI	GATC	4 cut(s)	72, 109, 141, 279
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	2 cut(s)	52, 318
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	4 cut(s)	72, 109, 141, 279
PfeI	GAWTC	3 cut(s)	49, 88, 227
PkrI	GCNGC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	4 cut(s)	72, 109, 141, 279
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	4 cut(s)	9, 63, 167, 247
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	75, 310
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	49, 88, 227
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	290
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.