Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

12570627 .. 12573129

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G130000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATACATCACAGAATGCAACAGCTGCAACTGGTGGGAGTGGCAGAAACGGGGTTTTGGTCCCTCAAACCAATGATACAACTGGAGCAACAGTGGTGGATGATCCAAAGCAAAACCTGAACGAGGTCAATAACTCTATTCAGAAAATTTTGGGGCTCATTCACCAGCTCTACCTCACTATCTCTTCGTTCAATGCTGCCTCTCAGCTCCCCCTCCTCCAACGCCTAAATGCTCTTGTTATTGAGCTTGACAACATGGCTAAGTTGTCTGAAAAATGCAATATCCAGGTTCCTATGGAAGTTTTTAATTTGATTGACGACGGGAAGAATCCTGATGAATTTACAAGGGATGTCATTAACAGCTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACCGATACCTTCAAGAGTTTACGCAAACATCTTCTGGAGGAACTTGAACAAACATTTCCTGATGAAGTTGAATCTTACAGAGAAATACGTGCTGCATCTGCTTCTGAAACAAAACGGCTTGCACAAGCACAAAGCATATTACAGAATGGGGATATGAAGGTCAAACCGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

5.12

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	147, 338
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	193, 409, 443, 467
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	5 cut(s)	26, 169, 208, 247, 363
AluI	AGCT	5 cut(s)	26, 169, 208, 247, 363
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	4 cut(s)	26, 197, 363, 488
ApoI	RAATTY	2 cut(s)	147, 338
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	13, 184, 350, 475
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	287
BisI	GCNGC	4 cut(s)	27, 198, 364, 489
BlsI	GCNGC	4 cut(s)	28, 199, 365, 490
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	63, 291, 567
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	105, 452
BsaAI	YACGTR	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	37, 88
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	106, 355
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	37, 88
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	13, 184, 350, 475
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	103, 381
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	63, 291, 567
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	37, 88
BssMI	GATC	2 cut(s)	103, 381
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	204, 261
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	106, 355
BstKTI	GATC	2 cut(s)	106, 384
BstMBI	GATC	2 cut(s)	103, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 494
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	13, 184, 350, 475
BtsCI	GGATG	2 cut(s)	106, 355
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	9 cut(s)	26, 157, 169, 208, 247, 260, 363, 514, 568
CviKI_1	RGCY	9 cut(s)	26, 157, 169, 208, 247, 260, 363, 514, 568
DdeI	CTNAG	2 cut(s)	204, 261
DpnI	GATC	2 cut(s)	105, 383
DpnII	GATC	2 cut(s)	103, 381
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	257, 296, 533, 551
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	27, 198, 364, 489
FokI	GGATG	2 cut(s)	113, 362
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	27, 198, 364, 489
GluI	GCNGC	4 cut(s)	27, 198, 364, 489
GsuI	CTGGAG	2 cut(s)	105, 452
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	2 cut(s)	328, 467
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	4 cut(s)	144, 271, 381, 502
Hpy188III	TCNNGA	4 cut(s)	332, 409, 431, 455
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	415, 547
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	6 cut(s)	20, 29, 279, 366, 491, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 494
HpyF3I	CTNAG	2 cut(s)	204, 261
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	103, 381
LmnI	GCTCC	3 cut(s)	86, 213, 565
LpnPI	CCDG	9 cut(s)	18, 69, 131, 179, 272, 299, 345, 416, 468
Lsp1109I	GCAGC	4 cut(s)	13, 184, 350, 475
LweI	GCATC	1 cut(s)	500
MaeII	ACGT	1 cut(s)	484
MalI	GATC	2 cut(s)	105, 383
MboI	GATC	2 cut(s)	103, 381
MboII	GAAGA	3 cut(s)	177, 337, 419
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	147, 307, 338
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	75, 118, 185, 211, 224, 227, 427
MseI	TTAA	3 cut(s)	306, 357, 571
MspA1I	CMGCKG	2 cut(s)	26, 363
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	26, 494
NdeII	GATC	2 cut(s)	103, 381
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	63, 291, 567
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	328, 467
PkrI	GCNGC	4 cut(s)	28, 199, 365, 490
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	63, 291, 567
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	2 cut(s)	26, 363
SaqAI	TTAA	3 cut(s)	306, 357, 571
SatI	GCNGC	4 cut(s)	27, 198, 364, 489
Sau3AI	GATC	2 cut(s)	103, 381
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	147, 307, 338
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	487
TasI	AATT	3 cut(s)	147, 307, 338
TfiI	GAWTC	2 cut(s)	328, 467
Tru1I	TTAA	3 cut(s)	306, 357, 571
Tru9I	TTAA	3 cut(s)	306, 357, 571
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	4 cut(s)	26, 197, 363, 488
TspDTI	ATGAA	3 cut(s)	351, 474, 566
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	147, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.