Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

5686912 .. 5691732

Gene Structure 4821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG078800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAAATACCGCTGAATTCCAATGCTGGGAGTAGTGGGAATAGCGACAATGGGAAGTTAGTCCCTCAAACAAATGATACAGCAGGAGAAACAGGGGTGGACGAGCAAAACCAAAACCTGAACGAGGTCATTAAGTCTACCGAGAAAACATTAGCCCTCATTCACCAGCTCTACCTCACTGTCTCTTCATTCACTACCGGTTCTCAGCTCCCCCTCCTCGAGCGCCTAAATGCTCTTGCCATGGAGCTGGACAATATGGCTATGTTGTCAGACAAATGCAATTTCCAGGTTCCTATGGAGGTTATTAAGTTGATCGACGATGGAAATAATCCTGATTTACTTACAAGGGATCTCATAAACAGCTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGATTTTACGAGAGCATCAACTGGAAGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGATGCTGCTTCTGCTGAAACGAAGCTTGCAGAAGGACAAAGAACATTGCCAAATGGAGATGTGAAGCACGAAGTCAAACCTGAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

191

Amino Acids

21.12

Weight (kDa)

4.62

Isoelectric Point (pI)

15.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	48 - 159	1.4e-28	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	27, 124
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	409, 443, 467
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	5 cut(s)	169, 208, 247, 363, 511
AluI	AGCT	5 cut(s)	169, 208, 247, 363, 511
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	363, 491
ApoI	RAATTY	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	350, 478
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	2 cut(s)	364, 492
BlsI	GCNGC	2 cut(s)	365, 493
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	433, 478
Bpu10I	CCTNAGC	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 124
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	366, 530
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	27, 124
BseMI	GCAATG	2 cut(s)	366, 530
BseMII	CTCAG	2 cut(s)	218, 558
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	350, 478
BseYI	CCCAGC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	27, 124
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	312, 349, 381
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	217, 559
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	357
BsrDI	GCAATG	2 cut(s)	366, 530
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	312, 349, 381
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	204, 567
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	315, 352, 384
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	312, 349, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 497
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	350, 478
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	8 cut(s)	155, 169, 208, 247, 260, 363, 511, 571
CviKI_1	RGCY	8 cut(s)	155, 169, 208, 247, 260, 363, 511, 571
DdeI	CTNAG	2 cut(s)	204, 567
DpnI	GATC	3 cut(s)	314, 351, 383
DpnII	GATC	3 cut(s)	312, 349, 381
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	244
FaiI	YATR	7 cut(s)	242, 257, 263, 296, 356, 472, 474
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	364, 492
Fsp4HI	GCNGC	2 cut(s)	364, 492
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	364, 492
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	100, 138
Hpy188I	TCNGA	2 cut(s)	271, 381
Hpy188III	TCNNGA	3 cut(s)	332, 409, 455
Hpy8I	GTNNAC	2 cut(s)	100, 138
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	415, 512
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	4, 279, 366, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 497
HpyF3I	CTNAG	2 cut(s)	204, 567
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	312, 349, 381
LmnI	GCTCC	2 cut(s)	213, 244
Lsp1109I	GCAGC	2 cut(s)	350, 478
LweI	GCATC	2 cut(s)	433, 478
MaeII	ACGT	1 cut(s)	484
MalI	GATC	3 cut(s)	314, 351, 383
MboI	GATC	3 cut(s)	312, 349, 381
MboII	GAAGA	2 cut(s)	177, 446
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	16, 280
MnlI	CCTC	7 cut(s)	75, 118, 167, 185, 224, 227, 292
MseI	TTAA	2 cut(s)	132, 306
MspA1I	CMGCKG	2 cut(s)	13, 363
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	10, 497
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	312, 349, 381
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	467
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	365, 493
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	291
PspXI	VCTCGAGB	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	132, 306
SatI	GCNGC	2 cut(s)	364, 492
Sau3AI	GATC	3 cut(s)	312, 349, 381
ScrFI	CCNGG	1 cut(s)	287
SfaNI	GCATC	2 cut(s)	433, 478
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	16, 280
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	219, 315
TasI	AATT	2 cut(s)	16, 280
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	132, 306
Tru9I	TTAA	2 cut(s)	132, 306
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	363, 491
TspDTI	ATGAA	2 cut(s)	177, 474
TspRI	CASTG	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.