Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004556.1

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

53419 .. 55620

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004556.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgggggataaattggtagaagcctatgatgggtttgctaggagccaacattcagagaccaatgaagaaatttatggtgtactgtcgtttgtgttgtggactcttgctctagtccctttggtcaagtatgtcttcatagtccttaaggccaacgataatggacaggtgaggatgagagggcctccggtttttgcgaagcaacctggaagagcgaaacctaggtttcgtgatggcgacgctgagcgtcgtggtttccaaaccagacagaggcgagtgaagggcggcgtggacgtggagaggccgtggtcccttttgcaacgacatcgggatctcaacctggattttcaaaggcttcgttttggggtgactgggatctgcatcgttgtggcggcgaccactgaccaaggttgggctcaattcgaggctgctggagacaatggctccggtgccgtcaagctatggggatgtgctgcacttcgtggacgcggcaggagggtcggcgatgaccgggccggtggcttggactggtatgctggagatcagtgtgggggcggggcacgaactggactgaaagcaaggactgggcctatttggctcaaatatgaaaatgggggctatatgctgcaaactctcaagaagagcccgaagagcaacccgatgccaaggttgtcggctacggaggaagctgcatatggtgctggttccaaccctatagggaagggacttgcgctttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

245

Amino Acids

26.8

Weight (kDa)

9.92

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	282, 389, 486, 552
AclWI	GGATC	2 cut(s)	336, 380
AcsI	RAATTY	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	30, 267, 409
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	347
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	202, 336
AluBI	AGCT	2 cut(s)	457, 686
AluI	AGCT	2 cut(s)	457, 686
Alw26I	GTCTC	2 cut(s)	50, 426
AlwI	GGATC	2 cut(s)	336, 380
AoxI	GGCC	5 cut(s)	147, 179, 299, 510, 584
ApeKI	GCWGC	4 cut(s)	425, 470, 622, 686
ApoI	RAATTY	1 cut(s)	69
AspA2I	CCTAGG	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	4 cut(s)	179, 306, 510, 584
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	178, 376
AvaII	GGWCC	1 cut(s)	306
AvrII	CCTAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	415, 644
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	412, 457, 609, 673
BccI	CCATC	2 cut(s)	23, 224
BceAI	ACGGC	2 cut(s)	286, 434
BcgI	CGANNNNNNTGC	4 cut(s)	305, 339, 478, 512
BciT130I	CCWGG	2 cut(s)	204, 338
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	50, 426
BfaI	CTAG	3 cut(s)	39, 110, 219
BfmI	CTRYAG	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	592
BisI	GCNGC	7 cut(s)	283, 390, 426, 471, 487, 623, 687
BlnI	CCTAGG	1 cut(s)	218
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	284, 391, 427, 472, 488, 624, 688
Bme1390I	CCNGG	3 cut(s)	204, 338, 509
Bme18I	GGWCC	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	4 cut(s)	179, 306, 510, 584
BmiI	GGNNCC	5 cut(s)	44, 308, 442, 448, 703
BmrFI	CCNGG	3 cut(s)	204, 338, 509
BmrI	ACTGGG	2 cut(s)	378, 591
BmsI	GCATC	2 cut(s)	387, 648
BmuI	ACTGGG	2 cut(s)	378, 591
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpmI	CTGGAG	2 cut(s)	450, 555
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	218, 302, 403, 662
BsaWI	WCCGGW	2 cut(s)	184, 443
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 425, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 267, 409
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	4 cut(s)	373, 530, 568, 586
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	204, 338
BseDI	CCNNGG	4 cut(s)	218, 302, 403, 662
BseGI	GGATG	2 cut(s)	177, 470
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	3 cut(s)	30, 267, 409
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	4 cut(s)	373, 530, 568, 586
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	4 cut(s)	412, 457, 609, 673
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	5 cut(s)	149, 181, 301, 512, 586
BshNI	GGYRCC	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	185, 444, 508, 513
BslFI	GGGAC	2 cut(s)	98, 292
BslI	CCNNNNNNNGG	3 cut(s)	30, 267, 409
BsmAI	GTCTC	2 cut(s)	50, 426
BsmFI	GGGAC	2 cut(s)	98, 292
BsnI	GGCC	5 cut(s)	149, 181, 301, 512, 586
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	415, 559, 644
Bsp143I	GATC	3 cut(s)	328, 372, 538
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	4 cut(s)	282, 389, 486, 552
BspANI	GGCC	5 cut(s)	149, 181, 301, 512, 586
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	5 cut(s)	44, 308, 442, 448, 703
BspPI	GGATC	2 cut(s)	336, 380
BspQI	GCTCTTC	3 cut(s)	202, 632, 641
BspT107I	GGYRCC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	4 cut(s)	373, 530, 568, 586
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	4 cut(s)	218, 302, 403, 662
BssMI	GATC	3 cut(s)	328, 372, 538
BssT1I	CCWWGG	3 cut(s)	218, 403, 662
Bst2UI	CCWGG	2 cut(s)	204, 338
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	3 cut(s)	202, 632, 641
BstAFI	CTTAAG	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	177, 470
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	3 cut(s)	331, 375, 541
BstMAI	GTCTC	2 cut(s)	50, 426
BstMBI	GATC	3 cut(s)	328, 372, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	592, 648, 695
BstNI	CCWGG	2 cut(s)	204, 338
BstSCI	CCNGG	3 cut(s)	202, 336, 507
BstSFI	CTRYAG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	4 cut(s)	412, 457, 609, 673
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	328, 372
BstYI	RGATCY	2 cut(s)	328, 372
BsuRI	GGCC	5 cut(s)	149, 181, 301, 512, 586
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	177, 470
BtsIMutI	CAGTG	2 cut(s)	396, 548
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	4 cut(s)	179, 306, 510, 584
CseI	GACGC	3 cut(s)	233, 245, 492
Csp6I	GTAC	1 cut(s)	80
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	330, 374, 540
DpnII	GATC	3 cut(s)	328, 372, 538
DraIII	CACNNNGTG	1 cut(s)	479
Eam1104I	CTCTTC	3 cut(s)	202, 632, 641
EarI	CTCTTC	3 cut(s)	202, 632, 641
Eco130I	CCWWGG	3 cut(s)	218, 403, 662
Eco24I	GRGCYC	2 cut(s)	415, 644
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	202, 336
EcoT14I	CCWWGG	3 cut(s)	218, 403, 662
EcoT38I	GRGCYC	2 cut(s)	415, 644
ErhI	CCWWGG	3 cut(s)	218, 403, 662
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	98, 292
FauI	CCCGC	1 cut(s)	545
FauNDI	CATATG	1 cut(s)	691
Fnu4HI	GCNGC	7 cut(s)	283, 390, 426, 471, 487, 623, 687
FokI	GGATG	2 cut(s)	184, 477
FriOI	GRGCYC	2 cut(s)	415, 644
Fsp4HI	GCNGC	7 cut(s)	283, 390, 426, 471, 487, 623, 687
FspBI	CTAG	3 cut(s)	39, 110, 219
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	7 cut(s)	283, 390, 426, 471, 487, 623, 687
GsuI	CTGGAG	2 cut(s)	450, 555
HaeIII	GGCC	5 cut(s)	149, 181, 301, 512, 586
HapII	CCGG	4 cut(s)	185, 444, 508, 513
HgaI	GACGC	3 cut(s)	233, 245, 492
HhaI	GCGC	1 cut(s)	730
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	4 cut(s)	185, 444, 508, 513
HphI	GGTGA	2 cut(s)	178, 376
Hpy166II	GTNNAC	4 cut(s)	80, 99, 289, 482
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	227, 326, 634
Hpy8I	GTNNAC	4 cut(s)	80, 99, 289, 482
Hpy99I	CGWCG	2 cut(s)	239, 249
HpyAV	CCTTC	2 cut(s)	271, 712
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	316, 378, 473, 625, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	592, 648, 695
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	291
HspAI	GCGC	1 cut(s)	728
Kzo9I	GATC	3 cut(s)	328, 372, 538
LguI	GCTCTTC	3 cut(s)	202, 632, 641
LmnI	GCTCC	2 cut(s)	42, 446
Lsp1109I	GCAGC	4 cut(s)	412, 457, 609, 673
LweI	GCATC	2 cut(s)	387, 648
MaeI	CTAG	3 cut(s)	39, 110, 219
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	330, 374, 540
MboI	GATC	3 cut(s)	328, 372, 538
MboII	GAAGA	5 cut(s)	77, 124, 219, 649, 658
MflI	RGATCY	2 cut(s)	328, 372
MhlI	GDGCHC	3 cut(s)	415, 559, 644
MluCI	AATT	3 cut(s)	11, 69, 416
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	8 cut(s)	162, 170, 192, 261, 291, 415, 486, 673
MseI	TTAA	2 cut(s)	144, 736
MslI	CAYNNNNRTG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	4 cut(s)	185, 444, 508, 513
MspR9I	CCNGG	3 cut(s)	204, 338, 509
MvaI	CCWGG	2 cut(s)	204, 338
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	592, 648, 695
NciI	CCSGG	1 cut(s)	509
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	3 cut(s)	328, 372, 538
NlaIV	GGNNCC	5 cut(s)	44, 308, 442, 448, 703
NmuCI	GTSAC	1 cut(s)	364
PciSI	GCTCTTC	3 cut(s)	202, 632, 641
PkrI	GCNGC	7 cut(s)	284, 391, 427, 472, 488, 624, 688
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	202, 336
PspGI	CCWGG	2 cut(s)	202, 336
PspN4I	GGNNCC	5 cut(s)	44, 308, 442, 448, 703
PspPI	GGNCC	4 cut(s)	179, 306, 510, 584
PsuI	RGATCY	2 cut(s)	328, 372
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	3 cut(s)	202, 632, 641
SaqAI	TTAA	2 cut(s)	144, 736
SatI	GCNGC	7 cut(s)	283, 390, 426, 471, 487, 623, 687
Sau3AI	GATC	3 cut(s)	328, 372, 538
Sau96I	GGNCC	4 cut(s)	179, 306, 510, 584
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	204, 338, 509
SduI	GDGCHC	3 cut(s)	415, 559, 644
SfaNI	GCATC	2 cut(s)	387, 648
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	143, 632
SmoI	CTYRAG	2 cut(s)	143, 632
Sse9I	AATT	3 cut(s)	11, 69, 416
SsiI	CCGC	4 cut(s)	282, 389, 486, 552
SspMI	CTAG	3 cut(s)	39, 110, 219
StyD4I	CCNGG	3 cut(s)	202, 336, 507
StyI	CCWWGG	3 cut(s)	218, 403, 662
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	11, 69, 416
TatI	WGTACW	1 cut(s)	79
TauI	GCSGC	3 cut(s)	285, 392, 489
Tru1I	TTAA	2 cut(s)	144, 736
Tru9I	TTAA	2 cut(s)	144, 736
TscAI	CASTG	2 cut(s)	403, 548
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	425, 470, 622, 686
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	78, 124, 618
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	403, 548
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	69
XmaJI	CCTAGG	1 cut(s)	218
XspI	CTAG	3 cut(s)	39, 110, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.