Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

33063420 .. 33067054

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAATCCACCTCCCAGTGGTCTGAGATGGATGCATTGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAATGGGATATTGGTCCCTCAAACCAATGATACAGCAGGAACAACAGGGGTGGATGATCCAAAGCAAGACCTGAACCAGGTCATTAACTCTATTCAGAAGACTTTAGGGCTCATTCACCAGCTCTACCTCACTGTCTCTTCGTTCAATGCCGGCTCTCAGCTCCCCCTCCTCCAGCGCCTAAATGCTCTTGTTATGGAGCTTGACAATATGGCTAAGTTGTCTGACAAATGCAATATCCAGGTTCCTATGGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGCTGTATCGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGAAAACATCTTCTCGACAAACTTGAACAGGCATTTCCTGATGGAGTTGAATCATATAGAGAAATACGTGCTGCTTCAGCTGCTGAAATGAAACGGCTTGCACAAGCACAAAGCACATTGCCAAATGGAGATGTGAAGGTCAAACCTGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

199

Amino Acids

21.72

Weight (kDa)

5.43

Isoelectric Point (pI)

24.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	55 - 168	9.5e-34	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	18, 151
AgsI	TTSAA	4 cut(s)	220, 436, 470, 494
AjnI	CCWGG	2 cut(s)	150, 312
AluBI	AGCT	5 cut(s)	196, 235, 274, 390, 524
AluI	AGCT	5 cut(s)	196, 235, 274, 390, 524
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	515, 524
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	88
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	502, 511
BccI	CCATC	3 cut(s)	22, 341, 479
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	2 cut(s)	152, 314
BcoDI	GTCTC	1 cut(s)	214
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	2 cut(s)	516, 525
BlsI	GCNGC	2 cut(s)	517, 526
Bme1390I	CCNGG	2 cut(s)	152, 314
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	90, 318
BmrFI	CCNGG	2 cut(s)	152, 314
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 151
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	82, 560
BseBI	CCWGG	2 cut(s)	152, 314
BseGI	GGATG	3 cut(s)	37, 133, 382
BseLI	CCNNNNNNNGG	2 cut(s)	18, 151
BseMI	GCAATG	2 cut(s)	82, 560
BseMII	CTCAG	3 cut(s)	15, 245, 582
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	502, 511
BseYI	CCCAGC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	18, 151
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	130, 408
BspCNI	CTCAG	3 cut(s)	16, 244, 583
BspLI	GGNNCC	2 cut(s)	90, 318
BspPI	GGATC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	82, 560
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	2 cut(s)	130, 408
Bst2UI	CCWGG	2 cut(s)	152, 314
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	226, 543
BstDEI	CTNAG	4 cut(s)	24, 231, 288, 591
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	37, 133, 382
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	133, 411
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	130, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 524
BstNI	CCWGG	2 cut(s)	152, 314
BstSCI	CCNGG	2 cut(s)	150, 312
BstV1I	GCAGC	2 cut(s)	502, 511
BstV2I	GAAGAC	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	37, 133, 382
BtsIMutI	CAGTG	2 cut(s)	23, 204
Cac8I	GCNNGC	2 cut(s)	226, 543
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	88
CsiI	ACCWGGT	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviJI	RGCY	9 cut(s)	184, 196, 228, 235, 274, 287, 390, 524, 541
CviKI_1	RGCY	9 cut(s)	184, 196, 228, 235, 274, 287, 390, 524, 541
DdeI	CTNAG	4 cut(s)	24, 231, 288, 591
DpnI	GATC	2 cut(s)	132, 410
DpnII	GATC	2 cut(s)	130, 408
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	150, 312
EcoT22I	ATGCAT	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	186
FaiI	YATR	6 cut(s)	269, 284, 323, 383, 499, 501
FaqI	GGGAC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	516, 525
FokI	GGATG	3 cut(s)	44, 140, 389
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	516, 525
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	516, 525
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	253
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	355, 494
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	25, 171, 298, 408
Hpy188III	TCNNGA	4 cut(s)	359, 436, 458, 482
HpyAV	CCTTC	2 cut(s)	442, 574
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	4 cut(s)	35, 47, 306, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 524
HpyF3I	CTNAG	4 cut(s)	24, 231, 288, 591
HpySE526I	ACGT	1 cut(s)	511
HspAI	GCGC	1 cut(s)	250
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	130, 408
LmnI	GCTCC	2 cut(s)	240, 271
Lsp1109I	GCAGC	2 cut(s)	502, 511
LweI	GCATC	1 cut(s)	22
MabI	ACCWGGT	1 cut(s)	150
MaeII	ACGT	1 cut(s)	511
MalI	GATC	2 cut(s)	132, 410
MboI	GATC	2 cut(s)	130, 408
MboII	GAAGA	3 cut(s)	184, 204, 446
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	334, 365
MnlI	CCTC	6 cut(s)	22, 102, 212, 251, 254, 319
Mph1103I	ATGCAT	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	3 cut(s)	159, 333, 598
MspA1I	CMGCKG	2 cut(s)	390, 524
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	152, 314
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	152, 314
MwoI	GCNNNNNNNGC	2 cut(s)	521, 524
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	2 cut(s)	130, 408
NgoMIV	GCCGGC	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	90, 318
NsiI	ATGCAT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	355, 494
PkrI	GCNGC	2 cut(s)	517, 526
Ppu21I	YACGTR	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	150, 312
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	150, 312
PspN4I	GGNNCC	2 cut(s)	90, 318
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	527
PvuII	CAGCTG	2 cut(s)	390, 524
SaqAI	TTAA	3 cut(s)	159, 333, 598
SatI	GCNGC	2 cut(s)	516, 525
Sau3AI	GATC	2 cut(s)	130, 408
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	152, 314
SduI	GDGCHC	1 cut(s)	186
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	2 cut(s)	334, 365
StyD4I	CCNGG	2 cut(s)	150, 312
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	334, 365
TfiI	GAWTC	2 cut(s)	355, 494
Tru1I	TTAA	3 cut(s)	159, 333, 598
Tru9I	TTAA	3 cut(s)	159, 333, 598
TscAI	CASTG	2 cut(s)	23, 211
TseI	GCWGC	2 cut(s)	515, 524
TspDTI	ATGAA	4 cut(s)	17, 56, 378, 548
TspRI	CASTG	2 cut(s)	23, 211
VpaK11BI	GGWCC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.