Rmu_sc0004208.1_g000016

PLATZ transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004208.1
Physical Location & Seq
Forward (+)
58516 .. 61697
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004208.1_g000016.1.cds

Sequence Viewer

Length: 1164 bp
atgagagtcgagagggagagcgagttcactcggaaccctagcgccgctgccttcattgggctgcttctatgcttttggaggacagtgttgatgtggctgctctggcgtctgaccgggcgacgtaattgggtcttcaatggtggaactggcctattagttgctctcttgcagagcaagtgttggtgtttgcactggtggatggctttgatgcaggcaacgccggagtcagggttgggttcgatctggtggattttcatcggggttggatttgctctggtgatctacggcgatgactggctgcgagtcttccggctaccggatggcctggcggcgacagaggctggctggaggcagaggatcaggttccctttccccctggatagggtttgggcttgggccggtgggcctgggctcaaacttggtctgagagatgcgtgggccttcaggcctagtcttgagctcaagtttgggttggttgagtttgctacaatggcgttggacaaacagagcaagaccaacctgttgccgaggttgttggctcttgatgaggctaaggagggtgttggctccaaccctacggggtttgtcccttcaaatcttctaccttcctggcttgccgttctgctcactgagaagttcttcaacgcttgcataattcacgaggaggagaggaagaacgagaagaacatttactgcttggactgttgcatcagtttctgccctcactgcttgacccctcaccaatctcacagactcttgaagataaggagatacgtttaccatgatgttataaagctagatgatgcttccaagttaatcgactgtgctttggttcaaattgatcacgttgtaagaacagaaggtggtctgtccaagtatctccgtgagtgtaatttcatggctctacccgaccctggtttagacgacggtttgctgactcccgacacggttctcgagccggccggttcggtccgaacctcctccggttccggaggctacggcgaattgggttgcatgtccttggcatgtacagctacgacagagattgtcaggaaaaagagaagcagcttattgagggcggcgtgccggccggtttcttcaccggtgtcggaaatcccggccggccggagaaaggggactccacaccgggctccgcttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

43.39

Weight (kDa)

8.92

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
AccIII TCCGGA 1 cut(s) 989
AciI CCGC 4 cut(s) 45, 329, 1079, 1154
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 4 cut(s) 960, 1088, 1119, 1123
AcuI CTGAAG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 1030
AfiI CCNNNNNNNGG 7 cut(s) 57, 227, 316, 381, 382, 914, 1132
AgeI ACCGGT 1 cut(s) 1102
AgsI TTSAA 5 cut(s) 136, 594, 643, 760, 836
AjnI CCWGG 5 cut(s) 324, 375, 406, 608, 913
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 460, 796, 1034, 1068
AluI AGCT 4 cut(s) 460, 796, 1034, 1068
Alw21I GWGCWC 1 cut(s) 462
AlwI GGATC 1 cut(s) 365
AlwNI CAGNNNCTG 2 cut(s) 341, 717
Ama87I CYCGRG 1 cut(s) 953
Aor13HI TCCGGA 1 cut(s) 989
ApeKI GCWGC 5 cut(s) 47, 61, 97, 298, 1065
AsiGI ACCGGT 1 cut(s) 1102
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 396, 404, 438, 970
AsuC2I CCSGG 3 cut(s) 115, 1118, 1148
AsuHPI GGTGA 3 cut(s) 289, 731, 1092
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 1 cut(s) 970
BanII GRGCYC 3 cut(s) 414, 462, 1153
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BauI CACGAG 1 cut(s) 659
BbsI GAAGAC 2 cut(s) 124, 298
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 5 cut(s) 34, 48, 84, 285, 1077
BccI CCATC 2 cut(s) 193, 314
BceAI ACGGC 3 cut(s) 301, 602, 1015
BciT130I CCWGG 5 cut(s) 326, 377, 408, 610, 915
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 3 cut(s) 115, 1118, 1148
BfaI CTAG 3 cut(s) 39, 450, 797
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 8 cut(s) 45, 48, 62, 98, 299, 330, 1066, 1080
BlsI GCNGC 8 cut(s) 46, 49, 63, 99, 300, 331, 1067, 1081
Bme1390I CCNGG 8 cut(s) 115, 326, 377, 408, 610, 915, 1118, 1148
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 1 cut(s) 953
BmgT120I GGNCC 4 cut(s) 396, 404, 438, 970
BmiI GGNNCC 5 cut(s) 35, 365, 568, 988, 1152
BmrFI CCNGG 8 cut(s) 115, 326, 377, 408, 610, 915, 1118, 1148
BmsI GCATC 4 cut(s) 198, 421, 717, 793
BpiI GAAGAC 2 cut(s) 124, 298
BpmI CTGGAG 1 cut(s) 367
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 446, 476
BpuMI CCSGG 3 cut(s) 115, 1118, 1148
BsaBI GATNNNNATC 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 5 cut(s) 375, 407, 527, 913, 1020
BsaWI WCCGGW 4 cut(s) 316, 983, 989, 1102
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 215, 245
Bsc4I CCNNNNNNNGG 7 cut(s) 57, 227, 316, 381, 382, 914, 1132
Bse118I RCCGGY 7 cut(s) 398, 958, 962, 1086, 1090, 1102, 1121
Bse1I ACTGG 3 cut(s) 151, 197, 299
Bse8I GATNNNNATC 1 cut(s) 254
BseAI TCCGGA 1 cut(s) 989
BseBI CCWGG 5 cut(s) 326, 377, 408, 610, 915
BseDI CCNNGG 5 cut(s) 375, 407, 527, 913, 1020
BseGI GGATG 2 cut(s) 204, 325
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 7 cut(s) 57, 227, 316, 381, 382, 914, 1132
BseMII CTCAG 2 cut(s) 416, 621
BseNI ACTGG 3 cut(s) 151, 197, 299
BseRI GAGGAG 3 cut(s) 677, 680, 970
BseX3I CGGCCG 4 cut(s) 960, 1088, 1119, 1123
BseXI GCAGC 5 cut(s) 34, 48, 84, 285, 1077
Bsh1285I CGRYCG 4 cut(s) 963, 1091, 1122, 1126
BshTI ACCGGT 1 cut(s) 1102
BsiEI CGRYCG 4 cut(s) 963, 1091, 1122, 1126
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 953
BslFI GGGAC 2 cut(s) 572, 1150
BslI CCNNNNNNNGG 7 cut(s) 57, 227, 316, 381, 382, 914, 1132
BsmFI GGGAC 2 cut(s) 572, 1150
BsoBI CYCGRG 1 cut(s) 953
Bsp1286I GDGCHC 3 cut(s) 414, 462, 1153
Bsp13I TCCGGA 1 cut(s) 989
Bsp1407I TGTACA 1 cut(s) 1028
Bsp143I GATC 4 cut(s) 240, 279, 357, 841
BspACI CCGC 4 cut(s) 45, 329, 1079, 1154
BspCNI CTCAG 2 cut(s) 417, 622
BspEI TCCGGA 1 cut(s) 989
BspLI GGNNCC 5 cut(s) 35, 365, 568, 988, 1152
BspPI GGATC 1 cut(s) 365
BsrFI RCCGGY 7 cut(s) 398, 958, 962, 1086, 1090, 1102, 1121
BsrGI TGTACA 1 cut(s) 1028
BsrI ACTGG 3 cut(s) 151, 197, 299
BssAI RCCGGY 7 cut(s) 398, 958, 962, 1086, 1090, 1102, 1121
BssECI CCNNGG 5 cut(s) 375, 407, 527, 913, 1020
BssMI GATC 4 cut(s) 240, 279, 357, 841
BssNI GRCGYC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 659
BssT1I CCWWGG 1 cut(s) 1020
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 5 cut(s) 326, 377, 408, 610, 915
Bst4CI ACNGT 5 cut(s) 85, 704, 824, 929, 949
BstACI GRCGYC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 1028
BstC8I GCNNGC 8 cut(s) 213, 343, 615, 649, 960, 1084, 1088, 1123
BstDEI CTNAG 3 cut(s) 425, 552, 630
BstF5I GGATG 2 cut(s) 204, 325
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 243, 282, 360, 844
BstMBI GATC 4 cut(s) 240, 279, 357, 841
BstMCI CGRYCG 4 cut(s) 963, 1091, 1122, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 103, 217, 338, 491, 726, 1031
BstNI CCWGG 5 cut(s) 326, 377, 408, 610, 915
BstNSI RCATGY 2 cut(s) 1018, 1029
BstSCI CCNGG 8 cut(s) 113, 324, 375, 406, 608, 913, 1116, 1146
BstV1I GCAGC 5 cut(s) 34, 48, 84, 285, 1077
BstV2I GAAGAC 2 cut(s) 124, 298
BstZI CGGCCG 4 cut(s) 960, 1088, 1119, 1123
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 204, 325
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 4 cut(s) 90, 190, 627, 724
Cac8I GCNNGC 8 cut(s) 213, 343, 615, 649, 960, 1084, 1088, 1123
CaiI CAGNNNCTG 2 cut(s) 341, 717
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 7 cut(s) 398, 958, 962, 1086, 1090, 1102, 1121
Cfr13I GGNCC 4 cut(s) 396, 404, 438, 970
CpoI CGGWCCG 1 cut(s) 970
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 1029
CspAI ACCGGT 1 cut(s) 1102
CspI CGGWCCG 1 cut(s) 970
CviAII CATG 4 cut(s) 782, 898, 1015, 1026
CviQI GTAC 1 cut(s) 1029
DdeI CTNAG 3 cut(s) 425, 552, 630
DpnI GATC 4 cut(s) 242, 281, 359, 843
DpnII GATC 4 cut(s) 240, 279, 357, 841
EaeI YGGCCR 4 cut(s) 960, 1088, 1119, 1123
EagI CGGCCG 4 cut(s) 960, 1088, 1119, 1123
Ecl136II GAGCTC 1 cut(s) 460
EclXI CGGCCG 4 cut(s) 960, 1088, 1119, 1123
Eco130I CCWWGG 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 3 cut(s) 414, 462, 1153
Eco47I GGWCC 1 cut(s) 970
Eco52I CGGCCG 4 cut(s) 960, 1088, 1119, 1123
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 460
EcoRII CCWGG 5 cut(s) 324, 375, 406, 608, 913
EcoT14I CCWWGG 1 cut(s) 1020
EcoT38I GRGCYC 3 cut(s) 414, 462, 1153
ErhI CCWWGG 1 cut(s) 1020
FaeI CATG 4 cut(s) 785, 901, 1018, 1029
FaiI YATR 7 cut(s) 70, 653, 783, 791, 899, 1016, 1027
FaqI GGGAC 2 cut(s) 572, 1150
FatI CATG 4 cut(s) 781, 897, 1014, 1025
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 8 cut(s) 45, 48, 62, 98, 299, 330, 1066, 1080
FokI GGATG 2 cut(s) 211, 332
FriOI GRGCYC 3 cut(s) 414, 462, 1153
FseI GGCCGGCC 1 cut(s) 1125
Fsp4HI GCNGC 8 cut(s) 45, 48, 62, 98, 299, 330, 1066, 1080
FspBI CTAG 3 cut(s) 39, 450, 797
GlaI GCGC 1 cut(s) 43
GluI GCNGC 8 cut(s) 45, 48, 62, 98, 299, 330, 1066, 1080
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 45
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 785, 901, 1018, 1029
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 6 cut(s) 6, 224, 303, 753, 937, 1138
HphI GGTGA 3 cut(s) 289, 731, 1092
Hpy166II GTNNAC 2 cut(s) 27, 778
Hpy188I TCNGA 5 cut(s) 33, 111, 426, 974, 1111
Hpy188III TCNNGA 9 cut(s) 10, 455, 542, 659, 757, 941, 953, 990, 1051
Hpy8I GTNNAC 2 cut(s) 27, 778
Hpy99I CGWCG 2 cut(s) 123, 929
HpyAV CCTTC 5 cut(s) 61, 451, 600, 615, 854
HpyCH4III ACNGT 5 cut(s) 85, 704, 824, 929, 949
HpyCH4IV ACGT 3 cut(s) 121, 774, 846
HpyCH4V TGCA 6 cut(s) 169, 190, 211, 651, 708, 1014
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 217, 338, 491, 726, 1031
HpyF3I CTNAG 3 cut(s) 425, 552, 630
HpySE526I ACGT 3 cut(s) 121, 774, 846
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 785, 901, 1018, 1029
HspAI GCGC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 989
KroI GCCGGC 3 cut(s) 958, 1086, 1121
KroNI GCCGGC 3 cut(s) 960, 1088, 1123
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 4 cut(s) 240, 279, 357, 841
LmnI GCTCC 2 cut(s) 572, 1156
Lsp1109I GCAGC 5 cut(s) 34, 48, 84, 285, 1077
LweI GCATC 4 cut(s) 198, 421, 717, 793
MaeI CTAG 3 cut(s) 39, 450, 797
MaeII ACGT 3 cut(s) 121, 774, 846
MalI GATC 4 cut(s) 242, 281, 359, 843
MboI GATC 4 cut(s) 240, 279, 357, 841
MboII GAAGA 8 cut(s) 124, 298, 590, 631, 685, 694, 772, 1089
MhlI GDGCHC 3 cut(s) 414, 462, 1153
MluCI AATT 5 cut(s) 124, 654, 837, 892, 1004
MlyI GAGTC 6 cut(s) 15, 233, 312, 747, 931, 1132
MmeI TCCRAC 4 cut(s) 244, 477, 594, 1089
MroI TCCGGA 1 cut(s) 989
MroNI GCCGGC 3 cut(s) 958, 1086, 1121
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 1 cut(s) 815
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 8 cut(s) 115, 326, 377, 408, 610, 915, 1118, 1148
MvaI CCWGG 5 cut(s) 326, 377, 408, 610, 915
MwoI GCNNNNNNNGC 6 cut(s) 103, 217, 338, 491, 726, 1031
NaeI GCCGGC 3 cut(s) 960, 1088, 1123
NciI CCSGG 3 cut(s) 115, 1118, 1148
NdeII GATC 4 cut(s) 240, 279, 357, 841
NgoMIV GCCGGC 3 cut(s) 958, 1086, 1121
NlaIII CATG 4 cut(s) 785, 901, 1018, 1029
NlaIV GGNNCC 5 cut(s) 35, 365, 568, 988, 1152
NmeAIII GCCGAG 1 cut(s) 552
NspI RCATGY 2 cut(s) 1018, 1029
PaeR7I CTCGAG 1 cut(s) 953
PceI AGGCCT 1 cut(s) 448
PdiI GCCGGC 3 cut(s) 960, 1088, 1123
PdmI GAANNNNTTC 1 cut(s) 638
PinAI ACCGGT 1 cut(s) 1102
PkrI GCNGC 8 cut(s) 46, 49, 63, 99, 300, 331, 1067, 1081
PleI GAGTC 6 cut(s) 14, 232, 311, 747, 931, 1132
PpsI GAGTC 6 cut(s) 14, 232, 311, 747, 931, 1132
PsiI TTATAA 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 5 cut(s) 324, 375, 406, 608, 913
PspGI CCWGG 5 cut(s) 324, 375, 406, 608, 913
PspN4I GGNNCC 5 cut(s) 35, 365, 568, 988, 1152
PspPI GGNCC 4 cut(s) 396, 404, 438, 970
PstNI CAGNNNCTG 2 cut(s) 341, 717
RigI GGCCGGCC 1 cut(s) 1125
RsaI GTAC 1 cut(s) 1030
RsaNI GTAC 1 cut(s) 1029
Rsr2I CGGWCCG 1 cut(s) 970
RsrII CGGWCCG 1 cut(s) 970
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 815
SatI GCNGC 8 cut(s) 45, 48, 62, 98, 299, 330, 1066, 1080
Sau3AI GATC 4 cut(s) 240, 279, 357, 841
Sau96I GGNCC 4 cut(s) 396, 404, 438, 970
SchI GAGTC 6 cut(s) 15, 233, 312, 747, 931, 1132
ScrFI CCNGG 8 cut(s) 115, 326, 377, 408, 610, 915, 1118, 1148
SduI GDGCHC 3 cut(s) 414, 462, 1153
SfaNI GCATC 4 cut(s) 198, 421, 717, 793
Sfr274I CTCGAG 1 cut(s) 953
SgrAI CRCCGGYG 1 cut(s) 1102
SinI GGWCC 1 cut(s) 970
SlaI CTCGAG 1 cut(s) 953
SmlI CTYRAG 3 cut(s) 455, 461, 953
SmoI CTYRAG 3 cut(s) 455, 461, 953
Sse9I AATT 5 cut(s) 124, 654, 837, 892, 1004
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 4 cut(s) 45, 329, 1079, 1154
SspMI CTAG 3 cut(s) 39, 450, 797
SstI GAGCTC 1 cut(s) 462
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 8 cut(s) 113, 324, 375, 406, 608, 913, 1116, 1146
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 5 cut(s) 85, 704, 824, 929, 949
TaiI ACGT 3 cut(s) 124, 777, 849
TaqI TCGA 4 cut(s) 9, 239, 819, 954
TaqII GACCGA 1 cut(s) 958
TasI AATT 5 cut(s) 124, 654, 837, 892, 1004
TatI WGTACW 1 cut(s) 1028
TauI GCSGC 3 cut(s) 47, 332, 1082
Tru1I TTAA 1 cut(s) 815
Tru9I TTAA 1 cut(s) 815
TscAI CASTG 4 cut(s) 90, 197, 634, 731
TseI GCWGC 5 cut(s) 47, 61, 97, 298, 1065
TspDTI ATGAA 4 cut(s) 43, 244, 886, 1148
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 4 cut(s) 90, 197, 634, 731
VpaK11BI GGWCC 1 cut(s) 970
XceI RCATGY 2 cut(s) 1018, 1029
XhoI CTCGAG 1 cut(s) 953
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 3 cut(s) 39, 450, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.