Rroxscaffold_1G00014720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004143
Physical Location & Seq
Forward (+)
18274968 .. 18281611
6644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014720.1

Sequence Viewer

Length: 336 bp
ATGGATTTGAAAGGCAGCAATAGTAGTAGTATTAAGAAGAGAGAACTGCCGTTTCGGTTCTCTACGCAGCTGCTTTCTACGCCTTCATCATCCATCGATCGCTTCAACTATCTCGCGATCATTATACCAAATTATTGGGCTTGCGGCCTGGATGGCTCACACCTCAATGCCTCAATGATGCGTCCGATGCTCAATGGAGAAACTTCCGAGGAAATTTACCTATTCTCACCATTGCTTAATTACGCCTTATGCCAAGACTTACGCCTTGTCTTTGAGACTCCCAAAAACGTCTTGGACTACGCCTCAAAGTTTCAAAACATTGGTCCTGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

5.71

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 213
AgsI TTSAA 3 cut(s) 10, 106, 314
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 15, 67, 70
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 27, 57, 79
BccI CCATC 2 cut(s) 101, 146
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 4 cut(s) 16, 68, 71, 145
BlsI GCNGC 4 cut(s) 17, 69, 72, 146
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 168, 177
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 89, 157
BseMI GCAATG 1 cut(s) 230
BseXI GCAGC 3 cut(s) 27, 57, 79
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 97, 117
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 97, 117
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 2 cut(s) 89, 157
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 100, 120
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 2 cut(s) 97, 117
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 79, 153, 187
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 27, 57, 79
BstXI CCANNNNNNTGG 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 2 cut(s) 89, 157
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 323
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 170
CviJI RGCY 4 cut(s) 70, 140, 147, 156
CviKI_1 RGCY 4 cut(s) 70, 140, 147, 156
DpnI GATC 2 cut(s) 99, 119
DpnII GATC 2 cut(s) 97, 117
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 147
FaiI YATR 2 cut(s) 125, 250
Fnu4HI GCNGC 4 cut(s) 16, 68, 71, 145
FokI GGATG 2 cut(s) 76, 164
Fsp4HI GCNGC 4 cut(s) 16, 68, 71, 145
GluI GCNGC 4 cut(s) 16, 68, 71, 145
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 170
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 219
Hpy188I TCNGA 2 cut(s) 186, 208
Hpy188III TCNNGA 2 cut(s) 115, 326
HpyAV CCTTC 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 153, 187
HpySE526I ACGT 1 cut(s) 288
Kzo9I GATC 2 cut(s) 97, 117
LpnPI CCDG 2 cut(s) 134, 161
Lsp1109I GCAGC 3 cut(s) 27, 57, 79
LweI GCATC 2 cut(s) 168, 177
MaeII ACGT 1 cut(s) 288
MalI GATC 2 cut(s) 99, 119
MboI GATC 2 cut(s) 97, 117
MboII GAAGA 1 cut(s) 49
MluCI AATT 3 cut(s) 130, 213, 238
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 4 cut(s) 173, 181, 202, 313
MseI TTAA 2 cut(s) 33, 237
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 79, 153, 187
NdeII GATC 2 cut(s) 97, 117
NruI TCGCGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 17, 69, 72, 146
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 323
PvuI CGATCG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 70
RruI TCGCGA 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 33, 237
SatI GCNGC 4 cut(s) 16, 68, 71, 145
Sau3AI GATC 2 cut(s) 97, 117
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 149
SetI ASST 4 cut(s) 72, 165, 222, 291
SfaNI GCATC 2 cut(s) 168, 177
SgeI CNNG 9 cut(s) 125, 127, 153, 160, 161, 220, 266, 278, 304
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 130, 213, 238
SsiI CCGC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 130, 213, 238
TauI GCSGC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 33, 237
Tru9I TTAA 2 cut(s) 33, 237
TseI GCWGC 3 cut(s) 15, 67, 70
TspDTI ATGAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.