Rroxscaffold_1G00014710

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004143
Physical Location & Seq
Forward (+)
18265863 .. 18273055
7193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014710.1

Sequence Viewer

Length: 282 bp
ATGGATTTGAAAGGCAGCAATAGTAGTAGTATTAAGAAGAGAGAACTGCCGTTTACGGTTCTCTACGCAGCTGCTTTCTACGCCTTCATCATCCATCGATCGCTTCAACTATCTCGCGATCATTATACCAAATTATTGGGCTTGCGGCCTGGATGGCTCACACCTCAATGCCTCAATGATGCGTCGATGCTCAATGGAGAAACTTCCGAGGAAATTTACCTATTCTCACCATTATCGGAGATGCGAGAGTTGAGTATTGAAGATTTGAGAGAGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

93

Amino Acids

10.7

Weight (kDa)

5.65

Isoelectric Point (pI)

72.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 213
AgsI TTSAA 3 cut(s) 10, 107, 260
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 15, 68, 71
ApoI RAATTY 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 219
BbvI GCAGC 3 cut(s) 27, 58, 80
BccI CCATC 2 cut(s) 102, 147
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 154
BisI GCNGC 4 cut(s) 16, 69, 72, 146
BlsI GCNGC 4 cut(s) 17, 70, 73, 147
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 169, 177, 231
Bsa29I ATCGAT 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 90, 158
BseXI GCAGC 3 cut(s) 27, 58, 80
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 101
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 98, 118
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 97
BspFNI CGCG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 98, 118
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 90, 158
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 2 cut(s) 101, 121
BstMBI GATC 2 cut(s) 98, 118
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 80, 154
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 27, 58, 80
BstXI CCANNNNNNTGG 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 97
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 97
BtsCI GGATG 2 cut(s) 90, 158
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 97
CseI GACGC 1 cut(s) 171
CviJI RGCY 4 cut(s) 71, 141, 148, 157
CviKI_1 RGCY 4 cut(s) 71, 141, 148, 157
DpnI GATC 2 cut(s) 100, 120
DpnII GATC 2 cut(s) 98, 118
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 148
FaiI YATR 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 16, 69, 72, 146
FokI GGATG 2 cut(s) 77, 165
Fsp4HI GCNGC 4 cut(s) 16, 69, 72, 146
GluI GCNGC 4 cut(s) 16, 69, 72, 146
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 171
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 208, 238
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 94, 268
HpyCH4III ACNGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 154
Kzo9I GATC 2 cut(s) 98, 118
LpnPI CCDG 2 cut(s) 135, 162
Lsp1109I GCAGC 3 cut(s) 27, 58, 80
LweI GCATC 3 cut(s) 169, 177, 231
MalI GATC 2 cut(s) 100, 120
MboI GATC 2 cut(s) 98, 118
MboII GAAGA 2 cut(s) 49, 272
MluCI AATT 2 cut(s) 131, 213
MnlI CCTC 3 cut(s) 174, 182, 202
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 80, 154
NdeII GATC 2 cut(s) 98, 118
NruI TCGCGA 1 cut(s) 117
PkrI GCNGC 4 cut(s) 17, 70, 73, 147
Ple19I CGATCG 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PvuI CGATCG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 71
RruI TCGCGA 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 4 cut(s) 16, 69, 72, 146
Sau3AI GATC 2 cut(s) 98, 118
ScrFI CCNGG 1 cut(s) 150
SetI ASST 3 cut(s) 73, 166, 222
SfaNI GCATC 3 cut(s) 169, 177, 231
SgeI CNNG 7 cut(s) 126, 128, 154, 161, 162, 220, 257
SmiMI CAYNNNNRTG 1 cut(s) 166
Sse9I AATT 2 cut(s) 131, 213
SsiI CCGC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 97, 185
TasI AATT 2 cut(s) 131, 213
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 3 cut(s) 15, 68, 71
TspDTI ATGAA 1 cut(s) 76
XapI RAATTY 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.