Rh1DG132200

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004143
Physical Location & Seq
Forward (+)
27522283 .. 27533140
10858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG132200.1

Sequence Viewer

Length: 1593 bp
ATGGATTTGAAAGGCAGCAATAGTAGTAGTATTAAGAAGAGAGAACTGCCGTTTCTGGTTCTCTACGCAGCTGCTTTCTACGCCTTTATCATCCATCGATCGCTTCAACTATCTCGCGATCATTATACCAAATTATTGGGCTTGCGGCCTGGATGGCTCACACCTCAATGCCTCAATGACGCGTCTGATGCTCAATGGAGAAACTTCCGAGGAAATTTACCTGTTCTCACCATTGTTTTCACGATATTTACGTCAATCGCTCAGTTGTCGAGGGCATATTTTCATTTGAAAGCCAGAGGGATGTCCATTATTTGGCTTTTGATTTCATTCACGTACCTATCGTATCTGCATGGAGCCTGCATCATATTTATCCTCTCAATCGCTTCAGTGAATTTTCTTTTGGTAAAGATATTTGCTCGAACGAAGTACTTCTCTTTTGTATTCTGGAGTTTCAACATATTCTTTCTTCTCTGCAATCGTATTTATGAAGGATACTCATTCTCCTCATTTGGGGAGCACTGGGCATTTTTGGACAACTTTCGGGGCACCTTTAGATGGCAAATTTGCTTTAACTTTGTTGTTTTGCGCATGGTAAGCTTTGGCTATGATTACCATTGGGCTCATCAAGATTCTCGTTTTGACCATGAGAAACATATTCAGCGTTGCAATATTTGTAGAGCCGGCAAAACTTGTTACCAAGTGTTACAGGAGAGAGGTGTCCAGAGCGACAAGTTTGCCTTTATCACTTACCTTTCTTATCTGGCGTATGCACCTCTTTATCTTGCTGGGCCAATTCTAAGCTTCAATGCCTTTGCTTCACAGCTGGATATTCCTCAAAACAATTATTCAGTTAGAGACACTACTTGGTACGGTTTGCGTTGGGTGTTCAGTCTCCTTCTGATGGAACTAATGACACATCTCTTTTACTACAATGCCTTTGCAATCAGCGGCATGTGGAAACAGTTATATCCTGTAGATGTGTTTATTATTGGATATGGGGTTTTAAACTTTATGTGGCTAAAGTTCTTTCTGATATGGCGCTATTTCCGGTTCTGGTCACTGATCTGTGGCATTGAGGTCCCTGAGAATATGCCAAAGTGTGTAAACAATTGCTACAACTTGGAAAGCTTTTGGAAGAACTGGCATGCTTCCTACAACAAATGGCTTGTGAGGTATTTGTACATACCTCTTGGCGGCTCTCAGAGAAAGCTTCTCAATGTGTGGGTTGTATTCACATTCGTTGCCATTTGGCATGATCTAGAGTGGAAGCTTCTTTCATGGGCATGGCTGACATGCTTATTCTTTATTCCGGAAATAATCTTCAAATCAGCAGCCGCTGCATTTCAGGCCAAGACTGCTCTTGGGGAGTTTATTGTTCGTGAATTTAGTGCAGCTGCTGGGGCGGTTACAATCACTTGCCTCATGGTTGCAAACCTTGTTGGTTTTGTGATTGGACCATCTGGGATTAGTTGGTTGGTTTCTCAATTCCTTAGCAGAGACGGATTACCGGTCTTGGCTGGCATGCTTTTGACATTTTATGTTGGGACTAAGCTTATGTTCCACATCCGTGATGCAAAACAAAGTACCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

530

Amino Acids

61.96

Weight (kDa)

9.38

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT PF03062 189 - 455 7.2e-40 MBOAT, membrane-bound O-acyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 312
AccII CGCG 2 cut(s) 117, 182
AccIII TCCGGA 1 cut(s) 1309
AciI CCGC 5 cut(s) 145, 948, 1194, 1335, 1403
AcsI RAATTY 4 cut(s) 214, 391, 561, 1382
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 5 cut(s) 335, 428, 869, 1181, 1585
AfiI CCNNNNNNNGG 5 cut(s) 312, 510, 555, 901, 1193
AflIII ACRYGT 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 1507
AgsI TTSAA 6 cut(s) 10, 107, 289, 454, 805, 1324
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AleI CACNNNNGTG 1 cut(s) 1566
AluBI AGCT 9 cut(s) 71, 597, 801, 823, 1128, 1210, 1270, 1394, 1552
AluI AGCT 9 cut(s) 71, 597, 801, 823, 1128, 1210, 1270, 1394, 1552
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 3 cut(s) 849, 896, 1491
AlwNI CAGNNNCTG 2 cut(s) 1337, 1397
Aor13HI TCCGGA 1 cut(s) 1309
AoxI GGCC 3 cut(s) 146, 788, 1347
ApeKI GCWGC 7 cut(s) 15, 68, 71, 1331, 1337, 1391, 1394
ApoI RAATTY 4 cut(s) 214, 391, 561, 1382
AsiGI ACCGGT 1 cut(s) 1507
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 2 cut(s) 588, 1041
AspS9I GGNCC 3 cut(s) 788, 1078, 1454
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 1078, 1454
BaeGI GKGCMC 1 cut(s) 548
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 7 cut(s) 27, 58, 80, 1324, 1343, 1381, 1403
BccI CCATC 5 cut(s) 102, 147, 549, 895, 1465
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 485
BcoDI GTCTC 3 cut(s) 849, 896, 1491
BfaI CTAG 1 cut(s) 1259
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 1042
BfuI GTATCC 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 1078, 1454
BmgT120I GGNCC 3 cut(s) 788, 1078, 1454
BmiI GGNNCC 3 cut(s) 355, 547, 1080
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 3 cut(s) 178, 369, 1561
BmuI ACTGGG 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 1490
Bsa29I ATCGAT 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 3 cut(s) 1047, 1309, 1507
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 5 cut(s) 312, 510, 555, 901, 1193
Bse118I RCCGGY 2 cut(s) 680, 1507
Bse1I ACTGG 2 cut(s) 524, 1145
BseAI TCCGGA 1 cut(s) 1309
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 4 cut(s) 90, 158, 306, 1563
BseLI CCNNNNNNNGG 5 cut(s) 312, 510, 555, 901, 1193
BseMII CTCAG 3 cut(s) 275, 1074, 1214
BseNI ACTGG 2 cut(s) 524, 1145
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 7 cut(s) 27, 58, 80, 1324, 1343, 1381, 1403
BseYI CCCAGC 2 cut(s) 785, 1397
BsgI GTGCAG 1 cut(s) 1410
Bsh1236I CGCG 2 cut(s) 117, 182
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 3 cut(s) 148, 790, 1349
BshNI GGYRCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 1507
BshVI ATCGAT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 4 cut(s) 681, 1048, 1310, 1508
BslFI GGGAC 2 cut(s) 1064, 1558
BslI CCNNNNNNNGG 5 cut(s) 312, 510, 555, 901, 1193
BsmAI GTCTC 3 cut(s) 849, 896, 1491
BsmBI CGTCTC 1 cut(s) 1491
BsmFI GGGAC 2 cut(s) 1064, 1558
BsnI GGCC 3 cut(s) 148, 790, 1349
Bsp1286I GDGCHC 3 cut(s) 519, 548, 622
Bsp13I TCCGGA 1 cut(s) 1309
Bsp1407I TGTACA 1 cut(s) 1179
Bsp143I GATC 4 cut(s) 98, 118, 1062, 1255
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 5 cut(s) 145, 948, 1194, 1335, 1403
BspANI GGCC 3 cut(s) 148, 790, 1349
BspCNI CTCAG 3 cut(s) 274, 1075, 1213
BspDI ATCGAT 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 1309
BspFNI CGCG 2 cut(s) 117, 182
BspLI GGNNCC 3 cut(s) 355, 547, 1080
BspT107I GGYRCC 1 cut(s) 545
BsrFI RCCGGY 2 cut(s) 680, 1507
BsrGI TGTACA 1 cut(s) 1179
BsrI ACTGG 2 cut(s) 524, 1145
BssAI RCCGGY 2 cut(s) 680, 1507
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 4 cut(s) 98, 118, 1062, 1255
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 872, 963
Bst6I CTCTTC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 1337
BstAUI TGTACA 1 cut(s) 1179
BstBAI YACGTR 1 cut(s) 333
BstC8I GCNNGC 6 cut(s) 143, 358, 682, 1146, 1519, 1523
BstDEI CTNAG 6 cut(s) 261, 797, 1083, 1200, 1490, 1548
BstF5I GGATG 4 cut(s) 90, 158, 306, 1563
BstFNI CGCG 2 cut(s) 117, 182
BstH2I RGCGCY 1 cut(s) 1042
BstHHI GCGC 2 cut(s) 588, 1041
BstKTI GATC 4 cut(s) 101, 121, 1065, 1258
BstMAI GTCTC 3 cut(s) 849, 896, 1491
BstMBI GATC 4 cut(s) 98, 118, 1062, 1255
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 8 cut(s) 80, 154, 188, 594, 1337, 1346, 1355, 1400
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 4 cut(s) 955, 1148, 1296, 1525
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 548
BstUI CGCG 2 cut(s) 117, 182
BstV1I GCAGC 7 cut(s) 27, 58, 80, 1324, 1343, 1381, 1403
BstXI CCANNNNNNTGG 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 97
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 3 cut(s) 148, 790, 1349
BsuTUI ATCGAT 1 cut(s) 97
BtsCI GGATG 4 cut(s) 90, 158, 306, 1563
BtsIMutI CAGTG 3 cut(s) 393, 517, 1058
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 6 cut(s) 143, 358, 682, 1146, 1519, 1523
CaiI CAGNNNCTG 2 cut(s) 1337, 1397
CfoI GCGC 2 cut(s) 588, 1041
Cfr10I RCCGGY 2 cut(s) 680, 1507
Cfr13I GGNCC 3 cut(s) 788, 1078, 1454
ClaI ATCGAT 1 cut(s) 97
CseI GACGC 2 cut(s) 171, 188
Csp6I GTAC 5 cut(s) 334, 427, 868, 1180, 1584
CspAI ACCGGT 1 cut(s) 1507
CviQI GTAC 5 cut(s) 334, 427, 868, 1180, 1584
DdeI CTNAG 6 cut(s) 261, 797, 1083, 1200, 1490, 1548
DpnI GATC 4 cut(s) 100, 120, 1064, 1257
DpnII GATC 4 cut(s) 98, 118, 1062, 1255
DraI TTTAAA 1 cut(s) 1005
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 1078, 1454
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 1078
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 622
Esp3I CGTCTC 1 cut(s) 1491
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 2 cut(s) 1064, 1558
FokI GGATG 4 cut(s) 77, 165, 313, 1550
FriOI GRGCYC 1 cut(s) 622
FspBI CTAG 1 cut(s) 1259
FspI TGCGCA 1 cut(s) 587
GlaI GCGC 2 cut(s) 587, 1040
GsaI CCCAGC 2 cut(s) 789, 1401
GsuI CTGGAG 1 cut(s) 466
HaeII RGCGCY 1 cut(s) 1042
HaeIII GGCC 3 cut(s) 148, 790, 1349
HapII CCGG 4 cut(s) 681, 1048, 1310, 1508
HgaI GACGC 2 cut(s) 171, 188
HhaI GCGC 2 cut(s) 588, 1041
Hin6I GCGC 2 cut(s) 586, 1039
HinP1I GCGC 2 cut(s) 586, 1039
HindIII AAGCTT 6 cut(s) 595, 799, 1126, 1208, 1268, 1550
HinfI GANTC 1 cut(s) 629
HpaII CCGG 4 cut(s) 681, 1048, 1310, 1508
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 1105
Hpy188I TCNGA 5 cut(s) 187, 209, 900, 1032, 1203
Hpy188III TCNNGA 8 cut(s) 116, 241, 445, 626, 721, 1259, 1310, 1379
Hpy8I GTNNAC 1 cut(s) 1105
HpyAV CCTTC 2 cut(s) 482, 905
HpyCH4III ACNGT 2 cut(s) 872, 963
HpyCH4IV ACGT 2 cut(s) 251, 332
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 154, 188, 594, 1337, 1346, 1355, 1400
HpyF3I CTNAG 6 cut(s) 261, 797, 1083, 1200, 1490, 1548
HpySE526I ACGT 2 cut(s) 251, 332
HspAI GCGC 2 cut(s) 586, 1039
Kpn2I TCCGGA 1 cut(s) 1309
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
Kzo9I GATC 4 cut(s) 98, 118, 1062, 1255
LmnI GCTCC 2 cut(s) 353, 514
Lsp1109I GCAGC 7 cut(s) 27, 58, 80, 1324, 1343, 1381, 1403
LweI GCATC 3 cut(s) 178, 369, 1561
MaeI CTAG 1 cut(s) 1259
MaeII ACGT 2 cut(s) 251, 332
MaeIII GTNAC 4 cut(s) 692, 702, 1056, 1405
MalI GATC 4 cut(s) 100, 120, 1064, 1257
MboI GATC 4 cut(s) 98, 118, 1062, 1255
MboII GAAGA 4 cut(s) 49, 458, 1147, 1312
MfeI CAATTG 1 cut(s) 1108
MhlI GDGCHC 3 cut(s) 519, 548, 622
MluCI AATT 9 cut(s) 131, 214, 391, 561, 792, 841, 1108, 1382, 1484
MluI ACGCGT 1 cut(s) 180
MroI TCCGGA 1 cut(s) 1309
MroNI GCCGGC 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 3 cut(s) 33, 570, 1004
MslI CAYNNNNRTG 3 cut(s) 166, 1282, 1566
MspA1I CMGCKG 5 cut(s) 71, 823, 948, 1337, 1394
MspI CCGG 4 cut(s) 681, 1048, 1310, 1508
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 1108
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 117, 182
MwoI GCNNNNNNNGC 8 cut(s) 80, 154, 188, 594, 1337, 1346, 1355, 1400
NaeI GCCGGC 1 cut(s) 682
NdeII GATC 4 cut(s) 98, 118, 1062, 1255
NgoMIV GCCGGC 1 cut(s) 680
NlaIV GGNNCC 3 cut(s) 355, 547, 1080
NmuCI GTSAC 1 cut(s) 1056
NruI TCGCGA 1 cut(s) 117
NsbI TGCGCA 1 cut(s) 587
NspI RCATGY 4 cut(s) 955, 1148, 1296, 1525
OliI CACNNNNGTG 1 cut(s) 1566
PaeI GCATGC 2 cut(s) 1148, 1525
PcsI WCGNNNNNNNCGW 2 cut(s) 248, 338
PdiI GCCGGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 629
PflMI CCANNNNNTGG 1 cut(s) 312
PinAI ACCGGT 1 cut(s) 1507
Ple19I CGATCG 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 333
PpuMI RGGWCCY 1 cut(s) 1078
Psp5II RGGWCCY 1 cut(s) 1078
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 2 cut(s) 785, 1397
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 355, 547, 1080
PspPI GGNCC 3 cut(s) 788, 1078, 1454
PspPPI RGGWCCY 1 cut(s) 1078
PstNI CAGNNNCTG 2 cut(s) 1337, 1397
PvuI CGATCG 1 cut(s) 101
PvuII CAGCTG 3 cut(s) 71, 823, 1394
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 5 cut(s) 335, 428, 869, 1181, 1585
RsaNI GTAC 5 cut(s) 334, 427, 868, 1180, 1584
RseI CAYNNNNRTG 3 cut(s) 166, 1282, 1566
SaqAI TTAA 3 cut(s) 33, 570, 1004
Sau3AI GATC 4 cut(s) 98, 118, 1062, 1255
Sau96I GGNCC 3 cut(s) 788, 1078, 1454
ScaI AGTACT 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 519, 548, 622
SfaNI GCATC 3 cut(s) 178, 369, 1561
SfcI CTRYAG 1 cut(s) 972
SinI GGWCC 2 cut(s) 1078, 1454
SmiMI CAYNNNNRTG 3 cut(s) 166, 1282, 1566
SphI GCATGC 2 cut(s) 1148, 1525
Sse9I AATT 9 cut(s) 131, 214, 391, 561, 792, 841, 1108, 1382, 1484
SsiI CCGC 5 cut(s) 145, 948, 1194, 1335, 1403
SspI AATATT 1 cut(s) 670
SspMI CTAG 1 cut(s) 1259
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 872, 963
TaiI ACGT 2 cut(s) 254, 335
TaqI TCGA 3 cut(s) 97, 269, 418
TasI AATT 9 cut(s) 131, 214, 391, 561, 792, 841, 1108, 1382, 1484
TatI WGTACW 2 cut(s) 426, 1179
TauI GCSGC 4 cut(s) 148, 951, 1197, 1337
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 3 cut(s) 33, 570, 1004
Tru9I TTAA 3 cut(s) 33, 570, 1004
TscAI CASTG 3 cut(s) 393, 524, 1065
TseFI GTSAC 1 cut(s) 1056
TseI GCWGC 7 cut(s) 15, 68, 71, 1331, 1337, 1391, 1394
Tsp45I GTSAC 1 cut(s) 1056
TspDTI ATGAA 4 cut(s) 272, 315, 501, 1266
TspGWI ACGGA 2 cut(s) 1515, 1556
TspRI CASTG 3 cut(s) 393, 524, 1065
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 1078, 1454
XapI RAATTY 4 cut(s) 214, 391, 561, 1382
XbaI TCTAGA 1 cut(s) 1258
XceI RCATGY 4 cut(s) 955, 1148, 1296, 1525
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 1259
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.