Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

21909070 .. 21911289

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGATCCGAGTGGGATGATGAACGAAGGAGGACCGTTTAATCTAGCGGAGATCTGGCAGTTTCCGTTGAACGGAGTTTCAACCGCCGGAGATTCTTCTAGAAGAAGCTTCGTTGGACCGAATCAGTTCGGTGATGCTGATCTAACCACAGCTGCTAACGGTGATCCAGCGCGTATGAGTCACGCGTTGTCTCAGGCGGTTATTGAAGGTATCTCCGGCGCTTGGAAACGGAGGGAAGATGAGTCTAAGTCGGCGAAGATCGTCTCCACCATTGGCGCTAGTGAAGGTGAGAACAAAAGACAGAAGATAGATGAAGTGTGTGATGGGAAAGCAGAAGCAGAATCGCTAGGAACAGAGACGGAACAAAAGAAGCAACAGATGGAACCAACGAAAGATTATATTCATGTTCGAGCTAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCTGAAAGAGCGAGAAGAGAGAAAATAAGTGAGCGGATGAAAATCTTGCAAGATCTTGTTCCGGGATGTAACAAGGTTATTGGAAAAGCACTTGTTCTAGATGAGATAATTAACTATATACAATCATTGCAACGTCAAGTTGAGTTCTTATCGATGAAGCTTGAAGCAGTCAACTCAAGAATGAACCCTGGTATCGAGGTTTTTCCACCCAAAGAGTTTGGTCAGCAAGCGTTTGAGAATCCGGAGATACAGTTCGGGTCGCAGTCTACGAGGGAATACAGTAGAGGAGCATCACCAGAGTGGTTGCACATGCAGATAGGATCAGGTGGTTTCGAAAGAACGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

264

Amino Acids

29.18

Weight (kDa)

5.58

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	146 - 193	5.8e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	151 - 196	2.5e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	713
AccII	CGCG	2 cut(s)	172, 185
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	4 cut(s)	47, 84, 197, 481
AclWI	GGATC	3 cut(s)	12, 158, 775
AfiI	CCNNNNNNNGG	2 cut(s)	71, 222
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	70, 81, 206, 611
AjnI	CCWGG	1 cut(s)	634
AleI	CACNNNNGTG	1 cut(s)	745
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	6 cut(s)	108, 152, 413, 428, 449, 607
AluI	AGCT	6 cut(s)	108, 152, 413, 428, 449, 607
Alw26I	GTCTC	3 cut(s)	195, 268, 350
AlwI	GGATC	3 cut(s)	12, 158, 775
Aor13HI	TCCGGA	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	172, 221, 278
AspS9I	GGNCC	2 cut(s)	32, 116
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	4 cut(s)	143, 173, 299, 732
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	32, 116
BaeI	ACNNNNGTAYC	2 cut(s)	622, 655
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	317, 373
BciT130I	CCWGG	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	3 cut(s)	195, 268, 350
BfaI	CTAG	6 cut(s)	44, 99, 279, 347, 414, 545
BfoI	RGCGCY	2 cut(s)	222, 279
BglII	AGATCT	2 cut(s)	51, 499
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	510, 636
Bme18I	GGWCC	2 cut(s)	32, 116
BmgT120I	GGNCC	2 cut(s)	32, 116
BmiI	GGNNCC	2 cut(s)	6, 384
BmrFI	CCNGG	2 cut(s)	510, 636
BmsI	GCATC	2 cut(s)	124, 746
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	599
BsaBI	GATNNNNATC	2 cut(s)	138, 488
BsaJI	CCNNGG	1 cut(s)	634
BsaWI	WCCGGW	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 222
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	2 cut(s)	138, 488
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	636
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	21, 489, 518
BseJI	GATNNNNATC	2 cut(s)	138, 488
BseLI	CCNNNNNNNGG	2 cut(s)	71, 222
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	2 cut(s)	172, 185
BshVI	ATCGAT	1 cut(s)	599
BsiSI	CCGG	4 cut(s)	87, 216, 509, 689
BslI	CCNNNNNNNGG	2 cut(s)	71, 222
BsmAI	GTCTC	3 cut(s)	195, 268, 350
BsmBI	CGTCTC	2 cut(s)	268, 350
Bsp119I	TTCGAA	1 cut(s)	780
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
BspACI	CCGC	4 cut(s)	47, 84, 197, 481
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	599
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	2 cut(s)	172, 185
BspLI	GGNNCC	2 cut(s)	6, 384
BspPI	GGATC	3 cut(s)	12, 158, 775
BspT104I	TTCGAA	1 cut(s)	780
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	5 cut(s)	36, 161, 443, 699, 728
Bst6I	CTCTTC	2 cut(s)	412, 457
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	2 cut(s)	192, 246
BstF5I	GGATG	3 cut(s)	21, 489, 518
BstFNI	CGCG	2 cut(s)	172, 185
BstH2I	RGCGCY	2 cut(s)	222, 279
BstHHI	GCGC	3 cut(s)	172, 221, 278
BstKTI	GATC	7 cut(s)	7, 54, 142, 166, 261, 502, 770
BstMAI	GTCTC	3 cut(s)	195, 268, 350
BstMBI	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	508, 634
BstUI	CGCG	2 cut(s)	172, 185
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	3 cut(s)	4, 51, 499
BstYI	RGATCY	3 cut(s)	4, 51, 499
Bsu15I	ATCGAT	1 cut(s)	599
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	21, 489, 518
Cac8I	GCNNGC	1 cut(s)	675
CfoI	GCGC	3 cut(s)	172, 221, 278
Cfr13I	GGNCC	2 cut(s)	32, 116
ClaI	ATCGAT	1 cut(s)	599
CviAII	CATG	2 cut(s)	404, 757
CviJI	RGCY	6 cut(s)	108, 152, 413, 428, 449, 607
CviKI_1	RGCY	6 cut(s)	108, 152, 413, 428, 449, 607
DdeI	CTNAG	2 cut(s)	192, 246
DpnI	GATC	7 cut(s)	6, 53, 141, 165, 260, 501, 769
DpnII	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
Eam1104I	CTCTTC	2 cut(s)	412, 457
EarI	CTCTTC	2 cut(s)	412, 457
Eco47I	GGWCC	2 cut(s)	32, 116
EcoRII	CCWGG	1 cut(s)	634
Esp3I	CGTCTC	2 cut(s)	268, 350
FaeI	CATG	2 cut(s)	407, 760
FaiI	YATR	6 cut(s)	176, 399, 405, 564, 566, 758
FalI	AAGNNNNNCTT	1 cut(s)	775
FatI	CATG	2 cut(s)	403, 756
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	3 cut(s)	28, 496, 525
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	6 cut(s)	44, 99, 279, 347, 414, 545
GlaI	GCGC	3 cut(s)	171, 220, 277
GluI	GCNGC	1 cut(s)	153
HaeII	RGCGCY	2 cut(s)	222, 279
HapII	CCGG	4 cut(s)	87, 216, 509, 689
HhaI	GCGC	3 cut(s)	172, 221, 278
Hin1II	CATG	2 cut(s)	407, 760
Hin6I	GCGC	3 cut(s)	170, 219, 276
HinP1I	GCGC	3 cut(s)	170, 219, 276
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	106, 605
HinfI	GANTC	6 cut(s)	92, 121, 178, 242, 341, 685
HpaII	CCGG	4 cut(s)	87, 216, 509, 689
HphI	GGTGA	4 cut(s)	143, 173, 299, 732
Hpy166II	GTNNAC	2 cut(s)	619, 714
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	5 cut(s)	99, 545, 624, 689, 792
Hpy8I	GTNNAC	2 cut(s)	619, 714
HpyAV	CCTTC	3 cut(s)	20, 200, 278
HpyCH4III	ACNGT	5 cut(s)	36, 161, 443, 699, 728
HpyCH4IV	ACGT	2 cut(s)	580, 788
HpyCH4V	TGCA	4 cut(s)	496, 577, 754, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	192, 246
HpySE526I	ACGT	2 cut(s)	580, 788
Hsp92II	CATG	2 cut(s)	407, 760
HspAI	GCGC	3 cut(s)	170, 219, 276
Kpn2I	TCCGGA	1 cut(s)	688
Kzo9I	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	124, 746
MaeI	CTAG	6 cut(s)	44, 99, 279, 347, 414, 545
MaeII	ACGT	2 cut(s)	580, 788
MaeIII	GTNAC	3 cut(s)	179, 437, 515
MalI	GATC	7 cut(s)	6, 53, 141, 165, 260, 501, 769
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
MboII	GAAGA	7 cut(s)	87, 114, 248, 268, 316, 429, 474
MflI	RGATCY	3 cut(s)	4, 51, 499
MluCI	AATT	1 cut(s)	555
MluI	ACGCGT	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	187, 251
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	23, 225, 413, 637, 711, 725
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	39, 558
MslI	CAYNNNNRTG	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	4 cut(s)	87, 216, 509, 689
MspR9I	CCNGG	2 cut(s)	510, 636
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	2 cut(s)	172, 185
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
NlaIII	CATG	2 cut(s)	407, 760
NlaIV	GGNNCC	2 cut(s)	6, 384
NmuCI	GTSAC	2 cut(s)	179, 437
NspI	RCATGY	1 cut(s)	760
NspV	TTCGAA	1 cut(s)	780
OliI	CACNNNNGTG	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	92, 121, 341, 685
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	186, 250
PpsI	GAGTC	2 cut(s)	186, 250
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	6, 384
PspPI	GGNCC	2 cut(s)	32, 116
PsuI	RGATCY	3 cut(s)	4, 51, 499
PvuII	CAGCTG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	745
SaqAI	TTAA	2 cut(s)	39, 558
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	7 cut(s)	4, 51, 139, 163, 258, 499, 767
Sau96I	GGNCC	2 cut(s)	32, 116
SchI	GAGTC	2 cut(s)	187, 251
ScrFI	CCNGG	2 cut(s)	510, 636
SfaNI	GCATC	2 cut(s)	124, 746
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	2 cut(s)	32, 116
SmiMI	CAYNNNNRTG	1 cut(s)	745
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	4 cut(s)	47, 84, 197, 481
SspMI	CTAG	6 cut(s)	44, 99, 279, 347, 414, 545
StyD4I	CCNGG	2 cut(s)	508, 634
TaaI	ACNGT	5 cut(s)	36, 161, 443, 699, 728
TaiI	ACGT	2 cut(s)	583, 791
TaqI	TCGA	4 cut(s)	409, 599, 642, 780
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	555
TfiI	GAWTC	4 cut(s)	92, 121, 341, 685
Tru1I	TTAA	2 cut(s)	39, 558
Tru9I	TTAA	2 cut(s)	39, 558
TseFI	GTSAC	2 cut(s)	179, 437
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	179, 437
TspDTI	ATGAA	6 cut(s)	35, 327, 392, 500, 617, 644
TspGWI	ACGGA	4 cut(s)	54, 87, 244, 374
VpaK11BI	GGWCC	2 cut(s)	32, 116
XbaI	TCTAGA	2 cut(s)	98, 544
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	6 cut(s)	44, 99, 279, 347, 414, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.