Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451895.1

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

613 .. 1619

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgaaggcagtaaatctgattcaggttattgggaaagcactggtccttgatgagataattaattatatccaatcattgcagcgtcaagtggagttcctgtctatgaagcttgaagcagttaatacaagaatgactcctgccatcgaggtgtttccttctaaagaatttggtcagcagacattcgacactgctgcaatggcattcggtacacaacctccaagggaatatagccgtggatcttcaccagaatggttgcatatgcaagttggtggcggttttgaaagaacaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

97

Amino Acids

10.91

Weight (kDa)

5.75

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	113, 281
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AlwI	GGATC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	79, 191
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	91, 178
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BisI	GCNGC	2 cut(s)	80, 192
BlsI	GCNGC	2 cut(s)	81, 193
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	218, 232
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 199, 229
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	74, 201
BseDI	CCNNGG	2 cut(s)	218, 232
BseMI	GCAATG	2 cut(s)	74, 201
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	91, 178
BsmI	GAATGC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	74, 201
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	218, 232
BssMI	GATC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	91, 178
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	38, 186
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	2 cut(s)	109, 231
CviKI_1	RGCY	2 cut(s)	109, 231
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaiI	YATR	6 cut(s)	66, 104, 228, 258, 260, 292
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	80, 192
Fsp4HI	GCNGC	2 cut(s)	80, 192
GluI	GCNGC	2 cut(s)	80, 192
HgaI	GACGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	19, 133
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	79, 194, 256, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	8, 26, 110, 150, 258
Lsp1109I	GCAGC	2 cut(s)	91, 178
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	1 cut(s)	231
MflI	RGATCY	1 cut(s)	236
MluCI	AATT	3 cut(s)	57, 61, 164
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	139, 225
MseI	TTAA	2 cut(s)	60, 120
MslI	CAYNNNNRTG	2 cut(s)	146, 247
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	81, 193
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	146, 247
SaqAI	TTAA	2 cut(s)	60, 120
SatI	GCNGC	2 cut(s)	80, 192
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	127
SetI	ASST	4 cut(s)	27, 111, 150, 217
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	146, 247
Sse9I	AATT	3 cut(s)	57, 61, 164
SsiI	CCGC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	144, 183
TasI	AATT	3 cut(s)	57, 61, 164
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	60, 120
Tru9I	TTAA	2 cut(s)	60, 120
TscAI	CASTG	2 cut(s)	45, 193
TseI	GCWGC	2 cut(s)	79, 191
TspDTI	ATGAA	2 cut(s)	17, 119
TspRI	CASTG	2 cut(s)	45, 193
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.