Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

32775621 .. 32778936

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35460.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCCTACTCCAACGGCAATGCGGGGTCGTATAATCTCTCGGAGATCTGGCAGTTTCCGATGAGCGGCGGCGGCGGCGGAATGGGGGACTCCGGAGGGCTGCGGAGGCAGAGTTTCGGGCAGTTTGGGGATGTTTCGGGTGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAATCAGATGAGTTTGGAGCAGAGAACTAGGAAGAGGAGAGATGCTGAGGATGAGTCCTCACCCAAAAGCAGCGGCAACATTGGCGCGGGTGATTGTGATGGGAAGCGGCATAAAACAGGGGGAAGATGTGGAGATGAAAATCATGAGGCCAAAGCTGAGGTAGAAACAAGTTCAGGGAAGCCTGTGGAGCAGAGTACTACTCAGCCGCCGGATCCGCCTAAGCAGGACTACATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATTAGCGAAAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTGCTTGATGAGATAATCAATTATATCCAATCCTTGCAGCGTCAAGTGGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATACAAGAATGACCCCTACCATTGAGGTATTTCCATCTAAAGAATTTGGTCAACAGACATTCGACGCTGCTGCAATGGCATTCGGTACACAACCTCCAAGGGAATATAGCCGTGGATCTTCACCAGAATGGTTGCATATGCAAGTTGGTGGCGGTTTTGAAAGAACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

276

Amino Acids

30.0

Weight (kDa)

6.02

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	158 - 205	3.9e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	163 - 208	1.7e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	122
AclWI	GGATC	5 cut(s)	12, 194, 410, 423, 778
AcsI	RAATTY	2 cut(s)	525, 698
AfaI	GTAC	3 cut(s)	400, 444, 742
AfiI	CCNNNNNNNGG	2 cut(s)	95, 538
AgsI	TTSAA	2 cut(s)	647, 815
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	4 cut(s)	359, 464, 494, 643
AluI	AGCT	4 cut(s)	359, 464, 494, 643
AlwI	GGATC	5 cut(s)	12, 194, 410, 423, 778
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	5 cut(s)	130, 273, 613, 722, 725
ApoI	RAATTY	2 cut(s)	525, 698
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	5 cut(s)	34, 209, 255, 305, 768
AvaII	GGWCC	1 cut(s)	541
BamHI	GGATCC	2 cut(s)	4, 415
BbvCI	CCTCAGC	2 cut(s)	249, 360
BbvI	GCAGC	5 cut(s)	117, 285, 625, 709, 712
BccI	CCATC	2 cut(s)	296, 697
BceAI	ACGGC	2 cut(s)	61, 750
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	1 cut(s)	546
BfaI	CTAG	2 cut(s)	231, 495
BglII	AGATCT	2 cut(s)	75, 535
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	6, 417, 543
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu10I	CCTNAGC	3 cut(s)	249, 360, 423
BsaBI	GATNNNNATC	2 cut(s)	204, 342
BsaJI	CCNNGG	3 cut(s)	544, 752, 766
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	6 cut(s)	127, 157, 617, 647, 733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 538
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	55, 735
Bse8I	GATNNNNATC	2 cut(s)	204, 342
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	544, 752, 766
BseGI	GGATG	4 cut(s)	166, 259, 435, 525
BseJI	GATNNNNATC	2 cut(s)	204, 342
BseLI	CCNNNNNNNGG	2 cut(s)	95, 538
BseMI	GCAATG	2 cut(s)	55, 735
BseMII	CTCAG	3 cut(s)	240, 351, 419
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	117, 285, 625, 709, 712
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	11, 123, 413
BslFI	GGGAC	3 cut(s)	131, 194, 527
BslI	CCNNNNNNNGG	2 cut(s)	95, 538
BsmFI	GGGAC	3 cut(s)	131, 194, 527
BsmI	GAATGC	2 cut(s)	35, 734
BsnI	GGCC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	3 cut(s)	241, 352, 418
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	6, 417, 543
BspPI	GGATC	5 cut(s)	12, 194, 410, 423, 778
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	55, 735
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	544, 752, 766
BssMI	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
BssT1I	CCWWGG	1 cut(s)	752
Bst2UI	CCWGG	1 cut(s)	546
Bst6I	CTCTTC	2 cut(s)	230, 493
BstDEI	CTNAG	4 cut(s)	249, 360, 405, 423
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	4 cut(s)	166, 259, 435, 525
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	6 cut(s)	7, 78, 202, 418, 538, 773
BstMBI	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 102, 105, 136, 285, 391, 418, 491, 731
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	117, 285, 625, 709, 712
BstX2I	RGATCY	5 cut(s)	4, 75, 415, 535, 770
BstYI	RGATCY	5 cut(s)	4, 75, 415, 535, 770
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	4 cut(s)	166, 259, 435, 525
BtsIMutI	CAGTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	2 cut(s)	605, 728
Csp6I	GTAC	3 cut(s)	399, 443, 741
CviAII	CATG	2 cut(s)	347, 440
CviQI	GTAC	3 cut(s)	399, 443, 741
DdeI	CTNAG	4 cut(s)	249, 360, 405, 423
DpnI	GATC	6 cut(s)	6, 77, 201, 417, 537, 772
DpnII	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
Eam1104I	CTCTTC	2 cut(s)	230, 493
EarI	CTCTTC	2 cut(s)	230, 493
EciI	GGCGGA	2 cut(s)	123, 408
Eco130I	CCWWGG	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	2 cut(s)	350, 443
FaqI	GGGAC	3 cut(s)	131, 194, 527
FatI	CATG	2 cut(s)	346, 439
FauI	CCCGC	2 cut(s)	46, 283
FauNDI	CATATG	1 cut(s)	792
FokI	GGATG	4 cut(s)	173, 266, 422, 532
FspBI	CTAG	2 cut(s)	231, 495
GlaI	GCGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	3 cut(s)	11, 123, 413
HgaI	GACGC	2 cut(s)	605, 728
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	350, 443
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	707
HindII	GTYRAC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	4 cut(s)	119, 175, 205, 257
HpaII	CCGG	3 cut(s)	11, 123, 413
HphI	GGTGA	5 cut(s)	34, 209, 255, 305, 768
Hpy166II	GTNNAC	2 cut(s)	707, 743
Hpy188I	TCNGA	4 cut(s)	73, 90, 204, 210
Hpy188III	TCNNGA	3 cut(s)	123, 179, 347
Hpy8I	GTNNAC	2 cut(s)	707, 743
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	485, 613, 728, 790, 796
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 102, 105, 136, 285, 391, 418, 491, 731
HpyF3I	CTNAG	4 cut(s)	249, 360, 405, 423
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	350, 443
HspAI	GCGC	1 cut(s)	288
Kpn2I	TCCGGA	1 cut(s)	122
Kzo9I	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
LmnI	GCTCC	3 cut(s)	38, 220, 391
Lsp1109I	GCAGC	5 cut(s)	117, 285, 625, 709, 712
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	231, 495
MaeII	ACGT	1 cut(s)	183
MalI	GATC	6 cut(s)	6, 77, 201, 417, 537, 772
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
MboII	GAAGA	4 cut(s)	247, 339, 510, 765
MflI	RGATCY	5 cut(s)	4, 75, 415, 535, 770
MluCI	AATT	3 cut(s)	525, 595, 698
MlyI	GAGTC	2 cut(s)	113, 266
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	119, 129, 231, 244, 271, 343, 355, 673, 759
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	781
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	3 cut(s)	11, 123, 413
MspR9I	CCNGG	1 cut(s)	546
Mva1269I	GAATGC	2 cut(s)	35, 734
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	9 cut(s)	16, 102, 105, 136, 285, 391, 418, 491, 731
NdeI	CATATG	1 cut(s)	792
NdeII	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
NlaIII	CATG	2 cut(s)	350, 443
NlaIV	GGNNCC	3 cut(s)	6, 417, 543
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	2 cut(s)	35, 734
PfeI	GAWTC	2 cut(s)	175, 205
PflMI	CCANNNNNTGG	1 cut(s)	538
PleI	GAGTC	2 cut(s)	113, 265
PpsI	GAGTC	2 cut(s)	113, 265
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	6, 417, 543
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	5 cut(s)	4, 75, 415, 535, 770
RsaI	GTAC	3 cut(s)	400, 444, 742
RsaNI	GTAC	3 cut(s)	399, 443, 741
RseI	CAYNNNNRTG	1 cut(s)	781
SaqAI	TTAA	1 cut(s)	654
Sau3AI	GATC	6 cut(s)	4, 75, 199, 415, 535, 770
Sau96I	GGNCC	1 cut(s)	541
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	113, 266
ScrFI	CCNGG	1 cut(s)	546
SetI	ASST	9 cut(s)	186, 361, 366, 466, 496, 561, 645, 684, 751
SfaNI	GCATC	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	781
Sse9I	AATT	3 cut(s)	525, 595, 698
SspMI	CTAG	2 cut(s)	231, 495
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	752
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	717
TasI	AATT	3 cut(s)	525, 595, 698
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	7 cut(s)	99, 102, 105, 108, 279, 313, 412
TfiI	GAWTC	2 cut(s)	175, 205
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	5 cut(s)	130, 273, 613, 722, 725
TspDTI	ATGAA	4 cut(s)	42, 354, 536, 653
TspRI	CASTG	1 cut(s)	579
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	541
XapI	RAATTY	2 cut(s)	525, 698
XspI	CTAG	2 cut(s)	231, 495
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.