Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

71713499 .. 71716474

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG419700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTCCCGATGAACAGCGCCGGCGCCGGCATGGGAGGGGGACTGGGGCTGCGGAGGCCGAGTTTCGGGCAGTTTGGGGACGTTTCGGGGGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAGTCCGATGAGTTTGGACCACCGAGCGAGGAAGAGGCGCGATGCTGAGGATGAGTCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGAACGGTTGTGATGGGAAACGGCTTAAAACAGCGGGGAGGTGTGGAGATGAGAATCTTGAGGCCAAAGCTGAGGCGGAAACGAGTTCAGGGAAGCCTGTGGAGCAGAACACTCAGCCGCCGGATCCACCTAAGCAGGACTATATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGTCACAGTCTTGCAGAAAGAGTAATCTACTTTCTTTTTTTTTCTCTCTCTCGCTTGGATCATATTGTAATGTGTAAAACTGTAAATTTTATAAATTTAGGACTTTGGGGTCTGGGAATTGCTAGATGGATGGAGCCATATCCGAGAGGATGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

208

Amino Acids

22.55

Weight (kDa)

6.9

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AasI	GACNNNNNNGTC	1 cut(s)	576
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	2 cut(s)	243, 290
AciI	CCGC	7 cut(s)	8, 133, 192, 276, 323, 365, 407
AclWI	GGATC	5 cut(s)	12, 194, 407, 420, 534
AcsI	RAATTY	2 cut(s)	553, 562
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	2 cut(s)	38, 441
AfiI	CCNNNNNNNGG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	359, 461
AluI	AGCT	2 cut(s)	359, 461
AlwI	GGATC	5 cut(s)	12, 194, 407, 420, 534
AoxI	GGCC	2 cut(s)	137, 351
ApeKI	GCWGC	2 cut(s)	130, 273
ApoI	RAATTY	2 cut(s)	553, 562
AspLEI	GCGC	4 cut(s)	101, 107, 243, 290
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	34, 209
AvaII	GGWCC	1 cut(s)	220
BamHI	GGATCC	2 cut(s)	4, 412
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	2 cut(s)	249, 360
BbvI	GCAGC	2 cut(s)	117, 285
BccI	CCATC	3 cut(s)	296, 588, 592
BceAI	ACGGC	2 cut(s)	61, 326
BfaI	CTAG	1 cut(s)	591
BfoI	RGCGCY	2 cut(s)	102, 108
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	4 cut(s)	131, 274, 277, 407
BlsI	GCNGC	4 cut(s)	132, 275, 278, 408
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	4 cut(s)	6, 106, 414, 603
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	3 cut(s)	249, 360, 420
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	3 cut(s)	10, 101, 107
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	3 cut(s)	259, 603, 623
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	240, 351, 416
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	117, 285
Bsh1236I	CGCG	2 cut(s)	243, 290
BshFI	GGCC	2 cut(s)	139, 353
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	11, 102, 108, 410
BslFI	GGGAC	3 cut(s)	135, 173, 194
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	135, 173, 194
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	139, 353
Bsp143I	GATC	5 cut(s)	4, 75, 199, 412, 526
BspACI	CCGC	7 cut(s)	8, 133, 192, 276, 323, 365, 407
BspANI	GGCC	2 cut(s)	139, 353
BspCNI	CTCAG	3 cut(s)	241, 352, 415
BspFNI	CGCG	2 cut(s)	243, 290
BspLI	GGNNCC	4 cut(s)	6, 106, 414, 603
BspPI	GGATC	5 cut(s)	12, 194, 407, 420, 534
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	3 cut(s)	10, 101, 107
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	3 cut(s)	10, 101, 107
BssMI	GATC	5 cut(s)	4, 75, 199, 412, 526
BssNI	GRCGYC	2 cut(s)	56, 105
Bst4CI	ACNGT	3 cut(s)	296, 476, 550
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	2 cut(s)	56, 105
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	4 cut(s)	249, 360, 402, 420
BstF5I	GGATG	3 cut(s)	259, 603, 623
BstFNI	CGCG	2 cut(s)	243, 290
BstH2I	RGCGCY	2 cut(s)	102, 108
BstHHI	GCGC	4 cut(s)	101, 107, 243, 290
BstKTI	GATC	5 cut(s)	7, 78, 202, 415, 529
BstMBI	GATC	5 cut(s)	4, 75, 199, 412, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 136, 285, 391
BstUI	CGCG	2 cut(s)	243, 290
BstV1I	GCAGC	2 cut(s)	117, 285
BstX2I	RGATCY	3 cut(s)	4, 75, 412
BstYI	RGATCY	3 cut(s)	4, 75, 412
BsuRI	GGCC	2 cut(s)	139, 353
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	259, 603, 623
Cac8I	GCNNGC	2 cut(s)	103, 109
CfoI	GCGC	4 cut(s)	101, 107, 243, 290
Cfr10I	RCCGGY	3 cut(s)	10, 101, 107
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	37, 440
CviAII	CATG	2 cut(s)	112, 437
CviJI	RGCY	9 cut(s)	130, 139, 313, 353, 359, 385, 406, 461, 604
CviKI_1	RGCY	9 cut(s)	130, 139, 313, 353, 359, 385, 406, 461, 604
CviQI	GTAC	2 cut(s)	37, 440
DdeI	CTNAG	4 cut(s)	249, 360, 402, 420
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	5 cut(s)	6, 77, 201, 414, 528
DpnII	GATC	5 cut(s)	4, 75, 199, 412, 526
DrdI	GACNNNNNNGTC	1 cut(s)	576
DseDI	GACNNNNNNGTC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	2 cut(s)	115, 440
FaiI	YATR	8 cut(s)	63, 113, 432, 438, 531, 560, 607, 625
FaqI	GGGAC	3 cut(s)	135, 173, 194
FatI	CATG	2 cut(s)	111, 436
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	131, 274, 277, 407
FokI	GGATG	2 cut(s)	266, 610
Fsp4HI	GCNGC	4 cut(s)	131, 274, 277, 407
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	4 cut(s)	100, 106, 242, 289
GluI	GCNGC	4 cut(s)	131, 274, 277, 407
HaeII	RGCGCY	2 cut(s)	102, 108
HaeIII	GGCC	2 cut(s)	139, 353
HapII	CCGG	4 cut(s)	11, 102, 108, 410
HhaI	GCGC	4 cut(s)	101, 107, 243, 290
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	2 cut(s)	115, 440
Hin6I	GCGC	4 cut(s)	99, 105, 241, 288
HinP1I	GCGC	4 cut(s)	99, 105, 241, 288
HinfI	GANTC	4 cut(s)	175, 205, 257, 343
HpaII	CCGG	4 cut(s)	11, 102, 108, 410
HphI	GGTGA	2 cut(s)	34, 209
Hpy188I	TCNGA	4 cut(s)	73, 204, 210, 612
Hpy188III	TCNNGA	3 cut(s)	88, 179, 347
Hpy99I	CGWCG	3 cut(s)	58, 61, 265
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	3 cut(s)	296, 476, 550
HpyCH4IV	ACGT	3 cut(s)	56, 162, 183
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 136, 285, 391
HpyF3I	CTNAG	4 cut(s)	249, 360, 402, 420
HpySE526I	ACGT	3 cut(s)	56, 162, 183
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	2 cut(s)	115, 440
HspAI	GCGC	4 cut(s)	99, 105, 241, 288
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	101, 107
KroNI	GCCGGC	2 cut(s)	103, 109
Kzo9I	GATC	5 cut(s)	4, 75, 199, 412, 526
LmnI	GCTCC	2 cut(s)	391, 601
Lsp1109I	GCAGC	2 cut(s)	117, 285
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	3 cut(s)	56, 162, 183
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	5 cut(s)	6, 77, 201, 414, 528
MboI	GATC	5 cut(s)	4, 75, 199, 412, 526
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	3 cut(s)	4, 75, 412
MluCI	AATT	3 cut(s)	553, 562, 585
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	214, 266
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	110, 129, 225, 231, 244, 321, 343, 355, 608
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	2 cut(s)	101, 107
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	2 cut(s)	276, 323
MspI	CCGG	4 cut(s)	11, 102, 108, 410
Mva1269I	GAATGC	1 cut(s)	35
MvnI	CGCG	2 cut(s)	243, 290
MwoI	GCNNNNNNNGC	4 cut(s)	16, 136, 285, 391
NaeI	GCCGGC	2 cut(s)	103, 109
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	5 cut(s)	4, 75, 199, 412, 526
NgoMIV	GCCGGC	2 cut(s)	101, 107
NlaIII	CATG	2 cut(s)	115, 440
NlaIV	GGNNCC	4 cut(s)	6, 106, 414, 603
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	470
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	2 cut(s)	103, 109
PfeI	GAWTC	2 cut(s)	175, 343
PkrI	GCNGC	4 cut(s)	132, 275, 278, 408
PleI	GAGTC	2 cut(s)	213, 265
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	213, 265
PsiI	TTATAA	1 cut(s)	560
PspN4I	GGNNCC	4 cut(s)	6, 106, 414, 603
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	3 cut(s)	4, 75, 412
RsaI	GTAC	2 cut(s)	38, 441
RsaNI	GTAC	2 cut(s)	37, 440
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	131, 274, 277, 407
Sau3AI	GATC	5 cut(s)	4, 75, 199, 412, 526
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	214, 266
SetI	ASST	7 cut(s)	59, 165, 186, 332, 361, 421, 463
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	553, 562, 585
SsiI	CCGC	7 cut(s)	8, 133, 192, 276, 323, 365, 407
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	296, 476, 550
TaiI	ACGT	3 cut(s)	59, 165, 186
TasI	AATT	3 cut(s)	553, 562, 585
TauI	GCSGC	2 cut(s)	279, 409
TfiI	GAWTC	2 cut(s)	175, 343
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	2 cut(s)	130, 273
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	42, 107
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	553, 562
XspI	CTAG	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.