Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

64663246 .. 64666329

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTTCCGATGAACAGCGGCGGCGCCGGCATGGGAGAGACTGGAGGGGGACTGGGGCTGCGGAGGCCGAGTTTCGGGCAGTTTGGGGACGTTTCGGGGGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAATCCGATGAGTTTGGACCACCGAGCGAGGAAGAGGCGCGATGCTGAGGATGAGTCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGAATGATTGTGATGGGAAACGGCTTAAAACAGCGGGGAGATGTGGAGATGAGAATCTTGAGGCCAAAGCTGAGGCGGAAACGAGTTCAGGGAAGCCTGTGGAGCGGAACACTCAGCCGCCGGATCCAGCTAAGCAGGACTACATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGTCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATTAGCGAAAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATCCAATCATTGCAGCGTCAAGTGGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATACAAGAATGACTCCTGCCATCGAGGTGTTTCCTTCTAAAGAATTTGGTCAGCAAACATTCGACACTGCTGCAATGGCATTCGGTACACAACCTCCAAGGGAATATAGCCGTGGATCTTCACCAGAATGGTTGCATATGCAAGTTGGTGGTGGTTTTGAAAGAACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

277

Amino Acids

30.19

Weight (kDa)

6.16

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	160 - 207	4.2e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	165 - 210	1.8e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	2 cut(s)	252, 299
AclWI	GGATC	5 cut(s)	12, 203, 416, 429, 784
AcsI	RAATTY	2 cut(s)	531, 704
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	3 cut(s)	38, 450, 748
AfiI	CCNNNNNNNGG	2 cut(s)	155, 544
AgsI	TTSAA	2 cut(s)	653, 821
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	5 cut(s)	368, 428, 470, 500, 649
AluI	AGCT	5 cut(s)	368, 428, 470, 500, 649
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	5 cut(s)	12, 203, 416, 429, 784
AoxI	GGCC	2 cut(s)	146, 360
ApeKI	GCWGC	4 cut(s)	139, 282, 619, 731
ApoI	RAATTY	2 cut(s)	531, 704
AseI	ATTAAT	1 cut(s)	600
AspLEI	GCGC	3 cut(s)	107, 252, 299
AspS9I	GGNCC	3 cut(s)	229, 547, 583
AsuHPI	GGTGA	3 cut(s)	34, 218, 774
AvaII	GGWCC	3 cut(s)	229, 547, 583
BamHI	GGATCC	2 cut(s)	4, 421
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	2 cut(s)	258, 369
BbvI	GCAGC	4 cut(s)	126, 294, 631, 718
BccI	CCATC	2 cut(s)	305, 689
BceAI	ACGGC	3 cut(s)	61, 335, 756
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	108
BglII	AGATCT	2 cut(s)	75, 541
BisI	GCNGC	8 cut(s)	100, 103, 140, 283, 286, 416, 620, 732
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	8 cut(s)	101, 104, 141, 284, 287, 417, 621, 733
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	3 cut(s)	229, 547, 583
BmgT120I	GGNCC	3 cut(s)	229, 547, 583
BmiI	GGNNCC	4 cut(s)	6, 106, 423, 549
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	2 cut(s)	258, 369
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	2 cut(s)	213, 351
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaJI	CCNNGG	3 cut(s)	550, 758, 772
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 623, 653, 739, 769
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 544
Bse118I	RCCGGY	2 cut(s)	10, 107
Bse1I	ACTGG	3 cut(s)	127, 138, 585
Bse3DI	GCAATG	3 cut(s)	55, 614, 741
Bse8I	GATNNNNATC	2 cut(s)	213, 351
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	550, 758, 772
BseGI	GGATG	3 cut(s)	268, 441, 531
BseJI	GATNNNNATC	2 cut(s)	213, 351
BseLI	CCNNNNNNNGG	2 cut(s)	155, 544
BseMI	GCAATG	3 cut(s)	55, 614, 741
BseMII	CTCAG	3 cut(s)	249, 360, 425
BseNI	ACTGG	3 cut(s)	127, 138, 585
BseXI	GCAGC	4 cut(s)	126, 294, 631, 718
Bsh1236I	CGCG	2 cut(s)	252, 299
BshFI	GGCC	2 cut(s)	148, 362
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	11, 108, 419
BslFI	GGGAC	4 cut(s)	144, 182, 203, 533
BslI	CCNNNNNNNGG	2 cut(s)	155, 544
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	4 cut(s)	144, 182, 203, 533
BsmI	GAATGC	2 cut(s)	35, 740
BsnI	GGCC	2 cut(s)	148, 362
Bsp143I	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
Bsp1720I	GCTNAGC	1 cut(s)	429
BspANI	GGCC	2 cut(s)	148, 362
BspCNI	CTCAG	3 cut(s)	250, 361, 424
BspFNI	CGCG	2 cut(s)	252, 299
BspLI	GGNNCC	4 cut(s)	6, 106, 423, 549
BspPI	GGATC	5 cut(s)	12, 203, 416, 429, 784
BspT107I	GGYRCC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	403
BsrDI	GCAATG	3 cut(s)	55, 614, 741
BsrFI	RCCGGY	2 cut(s)	10, 107
BsrI	ACTGG	3 cut(s)	127, 138, 585
BssAI	RCCGGY	2 cut(s)	10, 107
BssECI	CCNNGG	3 cut(s)	550, 758, 772
BssMI	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
BssNI	GRCGYC	2 cut(s)	56, 105
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	239, 499
BstACI	GRCGYC	2 cut(s)	56, 105
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	258, 369, 411, 429
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	3 cut(s)	268, 441, 531
BstFNI	CGCG	2 cut(s)	252, 299
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	3 cut(s)	107, 252, 299
BstKTI	GATC	6 cut(s)	7, 78, 211, 424, 544, 779
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 108, 145, 294, 400, 497, 737
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstUI	CGCG	2 cut(s)	252, 299
BstV1I	GCAGC	4 cut(s)	126, 294, 631, 718
BstX2I	RGATCY	5 cut(s)	4, 75, 421, 541, 776
BstYI	RGATCY	5 cut(s)	4, 75, 421, 541, 776
BsuRI	GGCC	2 cut(s)	148, 362
BtgI	CCRYGG	1 cut(s)	772
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	268, 441, 531
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	578, 726
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	3 cut(s)	107, 252, 299
Cfr10I	RCCGGY	2 cut(s)	10, 107
Cfr13I	GGNCC	3 cut(s)	229, 547, 583
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	3 cut(s)	37, 449, 747
CviAII	CATG	2 cut(s)	112, 446
CviQI	GTAC	3 cut(s)	37, 449, 747
DdeI	CTNAG	4 cut(s)	258, 369, 411, 429
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	6 cut(s)	6, 77, 210, 423, 543, 778
DpnII	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
Eam1104I	CTCTTC	2 cut(s)	239, 499
EarI	CTCTTC	2 cut(s)	239, 499
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	758
Eco47I	GGWCC	3 cut(s)	229, 547, 583
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	758
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	2 cut(s)	115, 449
FaiI	YATR	9 cut(s)	63, 113, 447, 606, 644, 768, 798, 800, 832
FaqI	GGGAC	4 cut(s)	144, 182, 203, 533
FatI	CATG	2 cut(s)	111, 445
FauI	CCCGC	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	8 cut(s)	100, 103, 140, 283, 286, 416, 620, 732
FokI	GGATG	3 cut(s)	275, 428, 538
Fsp4HI	GCNGC	8 cut(s)	100, 103, 140, 283, 286, 416, 620, 732
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	3 cut(s)	106, 251, 298
GluI	GCNGC	8 cut(s)	100, 103, 140, 283, 286, 416, 620, 732
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	148, 362
HapII	CCGG	3 cut(s)	11, 108, 419
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	3 cut(s)	107, 252, 299
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	2 cut(s)	115, 449
Hin6I	GCGC	3 cut(s)	105, 250, 297
HinP1I	GCGC	3 cut(s)	105, 250, 297
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	184, 214, 266, 352, 673
HpaII	CCGG	3 cut(s)	11, 108, 419
HphI	GGTGA	3 cut(s)	34, 218, 774
Hpy166II	GTNNAC	1 cut(s)	749
Hpy188I	TCNGA	4 cut(s)	73, 90, 213, 219
Hpy188III	TCNNGA	2 cut(s)	188, 356
Hpy8I	GTNNAC	1 cut(s)	749
Hpy99I	CGWCG	3 cut(s)	58, 61, 274
HpyAV	CCTTC	2 cut(s)	453, 705
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	3 cut(s)	56, 171, 192
HpyCH4V	TGCA	5 cut(s)	491, 619, 734, 796, 802
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 108, 145, 294, 400, 497, 737
HpyF3I	CTNAG	4 cut(s)	258, 369, 411, 429
HpySE526I	ACGT	3 cut(s)	56, 171, 192
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	2 cut(s)	115, 449
HspAI	GCGC	3 cut(s)	105, 250, 297
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	4 cut(s)	126, 294, 631, 718
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	3 cut(s)	56, 171, 192
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	6 cut(s)	6, 77, 210, 423, 543, 778
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
MboII	GAAGA	3 cut(s)	256, 516, 771
MflI	RGATCY	5 cut(s)	4, 75, 421, 541, 776
MluCI	AATT	4 cut(s)	531, 597, 601, 704
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	275, 667
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	119, 138, 234, 240, 253, 352, 364, 679, 765
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	3 cut(s)	324, 600, 660
MslI	CAYNNNNRTG	2 cut(s)	686, 787
MspA1I	CMGCKG	3 cut(s)	99, 285, 332
MspI	CCGG	3 cut(s)	11, 108, 419
MspR9I	CCNGG	1 cut(s)	552
Mva1269I	GAATGC	2 cut(s)	35, 740
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	2 cut(s)	252, 299
MwoI	GCNNNNNNNGC	7 cut(s)	16, 108, 145, 294, 400, 497, 737
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	115, 449
NlaIV	GGNNCC	4 cut(s)	6, 106, 423, 549
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	479
PctI	GAATGC	2 cut(s)	35, 740
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	184, 214, 352
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	8 cut(s)	101, 104, 141, 284, 287, 417, 621, 733
PleI	GAGTC	2 cut(s)	274, 667
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	274, 667
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	4 cut(s)	6, 106, 423, 549
PspPI	GGNCC	3 cut(s)	229, 547, 583
PsuI	RGATCY	5 cut(s)	4, 75, 421, 541, 776
RsaI	GTAC	3 cut(s)	38, 450, 748
RsaNI	GTAC	3 cut(s)	37, 449, 747
RseI	CAYNNNNRTG	2 cut(s)	686, 787
SaqAI	TTAA	3 cut(s)	324, 600, 660
SatI	GCNGC	8 cut(s)	100, 103, 140, 283, 286, 416, 620, 732
Sau3AI	GATC	6 cut(s)	4, 75, 208, 421, 541, 776
Sau96I	GGNCC	3 cut(s)	229, 547, 583
SchI	GAGTC	2 cut(s)	275, 667
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	1 cut(s)	244
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	229, 547, 583
SmiMI	CAYNNNNRTG	2 cut(s)	686, 787
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	531, 597, 601, 704
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	3 cut(s)	59, 174, 195
TaqI	TCGA	2 cut(s)	684, 723
TasI	AATT	4 cut(s)	531, 597, 601, 704
TauI	GCSGC	4 cut(s)	102, 105, 288, 418
TfiI	GAWTC	3 cut(s)	184, 214, 352
Tru1I	TTAA	3 cut(s)	324, 600, 660
Tru9I	TTAA	3 cut(s)	324, 600, 660
TscAI	CASTG	2 cut(s)	585, 733
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	4 cut(s)	139, 282, 619, 731
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	42, 107, 542, 659
TspRI	CASTG	2 cut(s)	585, 733
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	229, 547, 583
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	2 cut(s)	531, 704
XspI	CTAG	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.