Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

27248745 .. 27252137

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATCCGCCTACGCTCGTCAACGAGTGCTCCTTCTCGAATGCCAATGCGACGTCGTTTAATCTCTCGGAGATCTGGCAGTTCCCGATGAACGGCGGGGGCGCGAGCGGTGGGGATTCTGGAGGAGGAGGTGCGCTGGGGCTGCGGAGGCCGAACTTCGCTCAGAGTTTCGCGCAGTTTGGGGACGTTTCGGGTGCGATTCGGGACGTCTTGGCCGGTAGTGATCCGAATCCGATGAGCTTGGACGTCAGAGGCAGCCACGGTGGCGGTGCCGCGAGGAAAAGGCTCGATGCAGAGGACGAGTCCCCCAAAAGCAGTGGCCATATTGGCGGGAGTGATTGCGATGGGAAAAGGCTTAAAACAGCAGCAAGAAGTAGAGATGAGACCTGTGAGTCGAAAGCCGAAGCAGAAACCAGTTCAGGGAAGCCGGTGGAACAAAGTACTCAGCCCCCTGATCCACCTAAGCAGGACTATATCCATGTGCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGCCTTGCAGAAAGAGCCAGAAGAGAAAAGATAAGTGAGAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCCTTGGTCCTTGATGAGATAATTAATTACATCCAATCACTACAGCGTCAGGTGGAGTTCCTGTCAATGAAGCTTGAAGCAGTCAATACAAGAATGAACCCCGGAATTGAGGTGTTTCCTTCTAAAGATTTCGGTCAACAAACATTCGATACCTCTGCAATGGCATTTGGTACGCAACCTCCAAGGGAGTATAGTCGGGGGTCTTCACCAGAGTGGTTGCACATGCAGGTTGGTGGTGGTTTTGAAAGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

288

Amino Acids

30.93

Weight (kDa)

6.01

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AatII	GACGTC	3 cut(s)	56, 210, 249
Acc36I	ACCTGC	1 cut(s)	826
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	3 cut(s)	104, 173, 275
AciI	CCGC	7 cut(s)	8, 96, 108, 145, 267, 273, 330
AclWI	GGATC	3 cut(s)	12, 218, 449
AcoI	YGGCCR	2 cut(s)	213, 319
AcsI	RAATTY	1 cut(s)	564
AcyI	GRCGYC	3 cut(s)	53, 207, 246
AfaI	GTAC	2 cut(s)	442, 781
AfiI	CCNNNNNNNGG	3 cut(s)	92, 420, 577
AgsI	TTSAA	2 cut(s)	686, 854
AjnI	CCWGG	1 cut(s)	583
AleI	CACNNNNGTG	1 cut(s)	820
AluBI	AGCT	4 cut(s)	240, 488, 503, 682
AluI	AGCT	4 cut(s)	240, 488, 503, 682
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	12, 218, 449
AoxI	GGCC	3 cut(s)	149, 213, 319
ApeKI	GCWGC	3 cut(s)	142, 255, 365
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	3 cut(s)	104, 136, 175
AspS9I	GGNCC	2 cut(s)	580, 616
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	580, 616
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	129, 267, 377
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	826
BglI	GCCNNNNNGGC	2 cut(s)	264, 327
BglII	AGATCT	2 cut(s)	72, 574
BisI	GCNGC	4 cut(s)	143, 256, 273, 366
BlsI	GCNGC	4 cut(s)	144, 257, 274, 367
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	585, 711
Bme18I	GGWCC	2 cut(s)	580, 616
BmgT120I	GGNCC	2 cut(s)	580, 616
BmiI	GGNNCC	3 cut(s)	6, 271, 582
BmrFI	CCNGG	2 cut(s)	585, 711
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	53, 207, 246
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	259, 583, 612, 709, 791
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 656, 686, 772, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 420, 577
Bse118I	RCCGGY	2 cut(s)	215, 427
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	259, 583, 612, 709, 791
BseGI	GGATG	2 cut(s)	564, 639
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	92, 420, 577
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	176, 458
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	2 cut(s)	138, 141
BseXI	GCAGC	3 cut(s)	129, 267, 377
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	3 cut(s)	104, 173, 275
BshFI	GGCC	3 cut(s)	151, 215, 321
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	216, 428, 711
BslFI	GGGAC	4 cut(s)	197, 218, 289, 566
BslI	CCNNNNNNNGG	3 cut(s)	92, 420, 577
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	4 cut(s)	197, 218, 289, 566
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	151, 215, 321
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	4, 72, 223, 454, 574
BspACI	CCGC	7 cut(s)	8, 96, 108, 145, 267, 273, 330
BspANI	GGCC	3 cut(s)	151, 215, 321
BspCNI	CTCAG	2 cut(s)	175, 457
BspFNI	CGCG	3 cut(s)	104, 173, 275
BspLI	GGNNCC	3 cut(s)	6, 271, 582
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	12, 218, 449
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	2 cut(s)	215, 427
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	215, 427
BssECI	CCNNGG	5 cut(s)	259, 583, 612, 709, 791
BssMI	GATC	5 cut(s)	4, 72, 223, 454, 574
BssNI	GRCGYC	3 cut(s)	53, 207, 246
BssT1I	CCWWGG	2 cut(s)	612, 791
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	532
BstACI	GRCGYC	3 cut(s)	53, 207, 246
BstC8I	GCNNGC	2 cut(s)	106, 486
BstDEI	CTNAG	3 cut(s)	162, 444, 462
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	564, 639
BstFNI	CGCG	3 cut(s)	104, 173, 275
BstHHI	GCGC	3 cut(s)	104, 136, 175
BstKTI	GATC	5 cut(s)	7, 75, 226, 457, 577
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	4, 72, 223, 454, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 148, 264, 327, 530
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	2 cut(s)	583, 709
BstSFI	CTRYAG	1 cut(s)	650
BstUI	CGCG	3 cut(s)	104, 173, 275
BstV1I	GCAGC	3 cut(s)	129, 267, 377
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	3 cut(s)	4, 72, 574
BstYI	RGATCY	3 cut(s)	4, 72, 574
BsuRI	GGCC	3 cut(s)	151, 215, 321
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	564, 639
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	2 cut(s)	106, 486
CfoI	GCGC	3 cut(s)	104, 136, 175
Cfr10I	RCCGGY	2 cut(s)	215, 427
Cfr13I	GGNCC	2 cut(s)	580, 616
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	2 cut(s)	441, 780
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	2 cut(s)	479, 832
CviQI	GTAC	2 cut(s)	441, 780
DdeI	CTNAG	3 cut(s)	162, 444, 462
DpnI	GATC	5 cut(s)	6, 74, 225, 456, 576
DpnII	GATC	5 cut(s)	4, 72, 223, 454, 574
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	213, 319
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	612, 791
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	580, 616
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	612, 791
ErhI	CCWWGG	2 cut(s)	612, 791
FaeI	CATG	2 cut(s)	482, 835
FaiI	YATR	6 cut(s)	324, 474, 480, 801, 833, 862
FaqI	GGGAC	4 cut(s)	197, 218, 289, 566
FatI	CATG	2 cut(s)	478, 831
FauI	CCCGC	2 cut(s)	89, 323
Fnu4HI	GCNGC	4 cut(s)	143, 256, 273, 366
FokI	GGATG	2 cut(s)	571, 626
Fsp4HI	GCNGC	4 cut(s)	143, 256, 273, 366
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	3 cut(s)	103, 135, 174
GluI	GCNGC	4 cut(s)	143, 256, 273, 366
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	151, 215, 321
HapII	CCGG	3 cut(s)	216, 428, 711
HgaI	GACGC	1 cut(s)	644
HhaI	GCGC	3 cut(s)	104, 136, 175
Hin1I	GRCGYC	3 cut(s)	53, 207, 246
Hin1II	CATG	2 cut(s)	482, 835
Hin6I	GCGC	3 cut(s)	102, 134, 173
HinP1I	GCGC	3 cut(s)	102, 134, 173
HincII	GTYRAC	2 cut(s)	22, 746
HindII	GTYRAC	2 cut(s)	22, 746
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	5 cut(s)	116, 199, 229, 302, 392
HpaII	CCGG	3 cut(s)	216, 428, 711
HphI	GGTGA	1 cut(s)	807
Hpy166II	GTNNAC	2 cut(s)	22, 746
Hpy188I	TCNGA	5 cut(s)	70, 165, 228, 234, 251
Hpy188III	TCNNGA	4 cut(s)	37, 85, 120, 203
Hpy8I	GTNNAC	2 cut(s)	22, 746
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	3 cut(s)	43, 486, 738
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	4 cut(s)	53, 186, 207, 246
HpyCH4V	TGCA	5 cut(s)	293, 524, 767, 829, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 148, 264, 327, 530
HpyF3I	CTNAG	3 cut(s)	162, 444, 462
HpySE526I	ACGT	4 cut(s)	53, 186, 207, 246
Hsp92I	GRCGYC	3 cut(s)	53, 207, 246
Hsp92II	CATG	2 cut(s)	482, 835
HspAI	GCGC	3 cut(s)	102, 134, 173
Kzo9I	GATC	5 cut(s)	4, 72, 223, 454, 574
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	129, 267, 377
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	4 cut(s)	53, 186, 207, 246
MalI	GATC	5 cut(s)	6, 74, 225, 456, 576
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	5 cut(s)	4, 72, 223, 454, 574
MboII	GAAGA	2 cut(s)	549, 804
MflI	RGATCY	3 cut(s)	4, 72, 574
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	4 cut(s)	564, 630, 634, 714
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	311, 401
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	3 cut(s)	60, 357, 633
MslI	CAYNNNNRTG	1 cut(s)	820
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	3 cut(s)	216, 428, 711
MspR9I	CCNGG	2 cut(s)	585, 711
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	3 cut(s)	104, 173, 275
MwoI	GCNNNNNNNGC	5 cut(s)	142, 148, 264, 327, 530
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	5 cut(s)	4, 72, 223, 454, 574
NlaIII	CATG	2 cut(s)	482, 835
NlaIV	GGNNCC	3 cut(s)	6, 271, 582
NspI	RCATGY	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	820
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	116, 199, 229
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	144, 257, 274, 367
PleI	GAGTC	2 cut(s)	310, 400
PpsI	GAGTC	2 cut(s)	310, 400
PshBI	ATTAAT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	6, 271, 582
PspPI	GGNCC	2 cut(s)	580, 616
PsuI	RGATCY	3 cut(s)	4, 72, 574
RsaI	GTAC	2 cut(s)	442, 781
RsaNI	GTAC	2 cut(s)	441, 780
RseI	CAYNNNNRTG	1 cut(s)	820
SaqAI	TTAA	3 cut(s)	60, 357, 633
SatI	GCNGC	4 cut(s)	143, 256, 273, 366
Sau3AI	GATC	5 cut(s)	4, 72, 223, 454, 574
Sau96I	GGNCC	2 cut(s)	580, 616
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	2 cut(s)	311, 401
ScrFI	CCNGG	2 cut(s)	585, 711
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	580, 616
SmiMI	CAYNNNNRTG	1 cut(s)	820
Sse9I	AATT	4 cut(s)	564, 630, 634, 714
SsiI	CCGC	7 cut(s)	8, 96, 108, 145, 267, 273, 330
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	583, 709
StyI	CCWWGG	2 cut(s)	612, 791
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	4 cut(s)	56, 189, 210, 249
TaqI	TCGA	4 cut(s)	38, 288, 395, 756
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	4 cut(s)	564, 630, 634, 714
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	116, 199, 229
Tru1I	TTAA	3 cut(s)	60, 357, 633
Tru9I	TTAA	3 cut(s)	60, 357, 633
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	3 cut(s)	142, 255, 365
TspDTI	ATGAA	4 cut(s)	104, 575, 692, 719
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	580, 616
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	835
XspI	CTAG	1 cut(s)	489
ZraI	GACGTC	3 cut(s)	54, 208, 247
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.