Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

63301882 .. 63304647

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG427600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTCCCGATGAACAGCGCCGGCGCCGGCATGGGAGGGGGACTGGGGCTGCGGAGGCCGAGTTTCGGGCAGTTTGGGGACGTTTCGGGGGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAGTCCGATGAGTTTGGACCACCGAGCGAGGAAGAGGCGCGATGCTGAGGATGAGTCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGAACGGTTGTGATGGGAAACGGCTTAAAACAGCGGGAAGGTGTGGAGATGAGAATCTTGAGGCCAAAGCTGAGGCGGAAACGAGTTCAGGGAAGCCTGTGGAGCAGAACACTCAGCCGCCGGATCCACCTAAGCAGGACTATATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGTCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATTAGCGAAAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATCCAATCATTGCAGCGTCAAGTGGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATACAAGAATGACTCCTGCCATCGAGGTGTTTCCTTCTAAAGAAGGAACCTCTTTTTCCTGCAATTGTTTCCCTTGGCTGCCCATTTATCCACACTCAATCCATTTATCCACACTCAATGTTTTGGACAACTTTCTCTATGTTTGCTTTTCCCTACAATATTTGTTATTTGCTTTCATGACGAACTATGGCACTTTAGAAGTTGATGCGGAGAAGTATCTTGTTTTTTTTTTTTTCTTTCACCCTTTCCCTTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

303

Amino Acids

33.64

Weight (kDa)

6.11

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	157 - 204	4.8e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	162 - 207	2.1e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccII	CGCG	2 cut(s)	243, 290
AciI	CCGC	8 cut(s)	8, 133, 192, 276, 323, 365, 407, 860
AclWI	GGATC	4 cut(s)	12, 194, 407, 420
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	2 cut(s)	38, 441
AfiI	CCNNNNNNNGG	2 cut(s)	146, 535
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	359, 461, 491, 640
AluI	AGCT	4 cut(s)	359, 461, 491, 640
AlwI	GGATC	4 cut(s)	12, 194, 407, 420
AoxI	GGCC	2 cut(s)	137, 351
ApeKI	GCWGC	4 cut(s)	130, 273, 610, 730
ApoI	RAATTY	1 cut(s)	522
AseI	ATTAAT	1 cut(s)	591
AspLEI	GCGC	4 cut(s)	101, 107, 243, 290
AspS9I	GGNCC	3 cut(s)	220, 538, 574
AsuHPI	GGTGA	3 cut(s)	34, 209, 884
AvaII	GGWCC	3 cut(s)	220, 538, 574
BamHI	GGATCC	2 cut(s)	4, 412
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	2 cut(s)	249, 360
BbvI	GCAGC	4 cut(s)	117, 285, 622, 717
BccI	CCATC	2 cut(s)	296, 680
BceAI	ACGGC	2 cut(s)	61, 326
BciT130I	CCWGG	1 cut(s)	543
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	102, 108
BglII	AGATCT	2 cut(s)	75, 532
BisI	GCNGC	6 cut(s)	131, 274, 277, 407, 611, 731
BlsI	GCNGC	6 cut(s)	132, 275, 278, 408, 612, 732
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	3 cut(s)	220, 538, 574
BmgT120I	GGNCC	3 cut(s)	220, 538, 574
BmiI	GGNNCC	5 cut(s)	6, 106, 414, 540, 700
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	235, 847
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	3 cut(s)	249, 360, 420
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaJI	CCNNGG	2 cut(s)	541, 725
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 614, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 535
Bse118I	RCCGGY	3 cut(s)	10, 101, 107
Bse1I	ACTGG	2 cut(s)	129, 576
Bse3DI	GCAATG	2 cut(s)	55, 605
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	541, 725
BseGI	GGATG	2 cut(s)	259, 522
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	146, 535
BseMI	GCAATG	2 cut(s)	55, 605
BseMII	CTCAG	3 cut(s)	240, 351, 416
BseNI	ACTGG	2 cut(s)	129, 576
BseXI	GCAGC	4 cut(s)	117, 285, 622, 717
Bsh1236I	CGCG	2 cut(s)	243, 290
BshFI	GGCC	2 cut(s)	139, 353
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	11, 102, 108, 410
BslFI	GGGAC	4 cut(s)	135, 173, 194, 524
BslI	CCNNNNNNNGG	2 cut(s)	146, 535
BsmFI	GGGAC	4 cut(s)	135, 173, 194, 524
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	139, 353
Bsp143I	GATC	5 cut(s)	4, 75, 199, 412, 532
BspACI	CCGC	8 cut(s)	8, 133, 192, 276, 323, 365, 407, 860
BspANI	GGCC	2 cut(s)	139, 353
BspCNI	CTCAG	3 cut(s)	241, 352, 415
BspFNI	CGCG	2 cut(s)	243, 290
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	5 cut(s)	6, 106, 414, 540, 700
BspPI	GGATC	4 cut(s)	12, 194, 407, 420
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	55, 605
BsrFI	RCCGGY	3 cut(s)	10, 101, 107
BsrI	ACTGG	2 cut(s)	129, 576
BssAI	RCCGGY	3 cut(s)	10, 101, 107
BssECI	CCNNGG	2 cut(s)	541, 725
BssMI	GATC	5 cut(s)	4, 75, 199, 412, 532
BssNI	GRCGYC	2 cut(s)	56, 105
BssT1I	CCWWGG	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	296, 476
Bst6I	CTCTTC	2 cut(s)	230, 490
BstACI	GRCGYC	2 cut(s)	56, 105
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	4 cut(s)	249, 360, 402, 420
BstF5I	GGATG	2 cut(s)	259, 522
BstFNI	CGCG	2 cut(s)	243, 290
BstH2I	RGCGCY	2 cut(s)	102, 108
BstHHI	GCGC	4 cut(s)	101, 107, 243, 290
BstKTI	GATC	5 cut(s)	7, 78, 202, 415, 535
BstMBI	GATC	5 cut(s)	4, 75, 199, 412, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 136, 285, 391, 488
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	2 cut(s)	243, 290
BstV1I	GCAGC	4 cut(s)	117, 285, 622, 717
BstX2I	RGATCY	4 cut(s)	4, 75, 412, 532
BstYI	RGATCY	4 cut(s)	4, 75, 412, 532
BsuRI	GGCC	2 cut(s)	139, 353
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	259, 522
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	103, 109
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	4 cut(s)	101, 107, 243, 290
Cfr10I	RCCGGY	3 cut(s)	10, 101, 107
Cfr13I	GGNCC	3 cut(s)	220, 538, 574
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	37, 440
CviAII	CATG	3 cut(s)	112, 437, 829
CviQI	GTAC	2 cut(s)	37, 440
DdeI	CTNAG	4 cut(s)	249, 360, 402, 420
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	5 cut(s)	6, 77, 201, 414, 534
DpnII	GATC	5 cut(s)	4, 75, 199, 412, 532
Eam1104I	CTCTTC	2 cut(s)	230, 490
EarI	CTCTTC	2 cut(s)	230, 490
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	725
Eco47I	GGWCC	3 cut(s)	220, 538, 574
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	725
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	115, 440, 832
FaiI	YATR	9 cut(s)	63, 113, 432, 438, 597, 635, 792, 830, 840
FaqI	GGGAC	4 cut(s)	135, 173, 194, 524
FatI	CATG	3 cut(s)	111, 436, 828
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	6 cut(s)	131, 274, 277, 407, 611, 731
FokI	GGATG	2 cut(s)	266, 529
Fsp4HI	GCNGC	6 cut(s)	131, 274, 277, 407, 611, 731
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	4 cut(s)	100, 106, 242, 289
GluI	GCNGC	6 cut(s)	131, 274, 277, 407, 611, 731
HaeII	RGCGCY	2 cut(s)	102, 108
HaeIII	GGCC	2 cut(s)	139, 353
HapII	CCGG	4 cut(s)	11, 102, 108, 410
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	4 cut(s)	101, 107, 243, 290
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	3 cut(s)	115, 440, 832
Hin6I	GCGC	4 cut(s)	99, 105, 241, 288
HinP1I	GCGC	4 cut(s)	99, 105, 241, 288
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	5 cut(s)	175, 205, 257, 343, 664
HpaII	CCGG	4 cut(s)	11, 102, 108, 410
HphI	GGTGA	3 cut(s)	34, 209, 884
Hpy188I	TCNGA	3 cut(s)	73, 204, 210
Hpy188III	TCNNGA	4 cut(s)	88, 179, 347, 829
Hpy99I	CGWCG	3 cut(s)	58, 61, 265
HpyAV	CCTTC	4 cut(s)	321, 444, 689, 696
HpyCH4III	ACNGT	2 cut(s)	296, 476
HpyCH4IV	ACGT	3 cut(s)	56, 162, 183
HpyCH4V	TGCA	3 cut(s)	482, 610, 714
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 136, 285, 391, 488
HpyF3I	CTNAG	4 cut(s)	249, 360, 402, 420
HpySE526I	ACGT	3 cut(s)	56, 162, 183
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	3 cut(s)	115, 440, 832
HspAI	GCGC	4 cut(s)	99, 105, 241, 288
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	101, 107
KroNI	GCCGGC	2 cut(s)	103, 109
Kzo9I	GATC	5 cut(s)	4, 75, 199, 412, 532
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	4 cut(s)	117, 285, 622, 717
LweI	GCATC	2 cut(s)	235, 847
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	3 cut(s)	56, 162, 183
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	5 cut(s)	6, 77, 201, 414, 534
MboI	GATC	5 cut(s)	4, 75, 199, 412, 532
MboII	GAAGA	3 cut(s)	247, 507, 898
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	4 cut(s)	4, 75, 412, 532
MluCI	AATT	4 cut(s)	522, 588, 592, 715
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	3 cut(s)	214, 266, 658
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	110, 129, 225, 231, 244, 343, 355, 670, 712
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	2 cut(s)	101, 107
MseI	TTAA	3 cut(s)	315, 591, 651
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	2 cut(s)	276, 323
MspI	CCGG	4 cut(s)	11, 102, 108, 410
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	243, 290
MwoI	GCNNNNNNNGC	5 cut(s)	16, 136, 285, 391, 488
NaeI	GCCGGC	2 cut(s)	103, 109
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	5 cut(s)	4, 75, 199, 412, 532
NgoMIV	GCCGGC	2 cut(s)	101, 107
NlaIII	CATG	3 cut(s)	115, 440, 832
NlaIV	GGNNCC	5 cut(s)	6, 106, 414, 540, 700
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	2 cut(s)	103, 109
PfeI	GAWTC	2 cut(s)	175, 343
PflMI	CCANNNNNTGG	1 cut(s)	535
PkrI	GCNGC	6 cut(s)	132, 275, 278, 408, 612, 732
PleI	GAGTC	3 cut(s)	213, 265, 658
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	3 cut(s)	213, 265, 658
PshBI	ATTAAT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	5 cut(s)	6, 106, 414, 540, 700
PspPI	GGNCC	3 cut(s)	220, 538, 574
PsuI	RGATCY	4 cut(s)	4, 75, 412, 532
RsaI	GTAC	2 cut(s)	38, 441
RsaNI	GTAC	2 cut(s)	37, 440
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	3 cut(s)	315, 591, 651
SatI	GCNGC	6 cut(s)	131, 274, 277, 407, 611, 731
Sau3AI	GATC	5 cut(s)	4, 75, 199, 412, 532
Sau96I	GGNCC	3 cut(s)	220, 538, 574
SchI	GAGTC	3 cut(s)	214, 266, 658
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	235, 847
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	3 cut(s)	220, 538, 574
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	522, 588, 592, 715
SsiI	CCGC	8 cut(s)	8, 133, 192, 276, 323, 365, 407, 860
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	2 cut(s)	283, 812
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	2 cut(s)	296, 476
TaiI	ACGT	3 cut(s)	59, 165, 186
TaqI	TCGA	1 cut(s)	675
TasI	AATT	4 cut(s)	522, 588, 592, 715
TauI	GCSGC	2 cut(s)	279, 409
TfiI	GAWTC	2 cut(s)	175, 343
Tru1I	TTAA	3 cut(s)	315, 591, 651
Tru9I	TTAA	3 cut(s)	315, 591, 651
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	4 cut(s)	130, 273, 610, 730
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	5 cut(s)	42, 107, 533, 650, 817
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	3 cut(s)	220, 538, 574
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	522
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.