Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029783.1

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Forward (+)

34040 .. 36289

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029783.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggatccgccggtgtcgctggtgaatgaatgctcgtactccaacggcaatgcgacgtcgtataatctctcggagatctggcagtttccgatgaacagcgccggcgccggcatgggagggggactggggctgcggaggccgagtttcgggcagtttggggacgttttgggcggtggtgatccgaatccgatgagtttggaccaccgagcgaggaagaggcgcgatgctgaggatgagtcgtcgccgtcgcccaaaagcagcggcaatattggcgcgaacggttgtgatgggaaacggcttaaaacagcggggaggtgtggagatgagaatccagaggccaaagctgaggcggaaacgagttcagggaagcctgtggagcagaacactcagccgccggatccacctaagcaggactatatccatgtacgagcaagaaggggtcaagctactgatagtcacagtcttgcagaaagagctagaagagaaaagattagcgaaaggatgaaaattctccaagatctggtccctggttgtaataaggttattgggaaagcactggtccttgatgagataattaattatatccaatcattgcagcgtcaagtggagttcctgtctatgaagcttgaagcagttaatacaagaatgactcctgccatcgaggtgtttccttctaaagaatttggtcagcagacattcgacactgctgcaatggcattcggtacacaacctccaagggaatatagccgtggatcttcaccagaatggttgcatatgcaagttggtggcggttttgaaagaacaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

269

Amino Acids

29.33

Weight (kDa)

6.46

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccII	CGCG	2 cut(s)	222, 275
AciI	CCGC	8 cut(s)	8, 133, 171, 261, 308, 350, 392, 789
AclWI	GGATC	5 cut(s)	12, 173, 392, 405, 760
AcsI	RAATTY	2 cut(s)	507, 680
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	3 cut(s)	38, 426, 724
AfiI	CCNNNNNNNGG	2 cut(s)	146, 520
AgsI	TTSAA	2 cut(s)	629, 797
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	4 cut(s)	344, 446, 476, 625
AluI	AGCT	4 cut(s)	344, 446, 476, 625
AlwI	GGATC	5 cut(s)	12, 173, 392, 405, 760
AoxI	GGCC	2 cut(s)	137, 336
ApeKI	GCWGC	4 cut(s)	130, 258, 595, 707
ApoI	RAATTY	2 cut(s)	507, 680
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	4 cut(s)	101, 107, 222, 275
AspS9I	GGNCC	3 cut(s)	199, 523, 559
AsuHPI	GGTGA	3 cut(s)	34, 188, 750
AvaII	GGWCC	3 cut(s)	199, 523, 559
BamHI	GGATCC	2 cut(s)	4, 397
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	2 cut(s)	228, 345
BbvI	GCAGC	4 cut(s)	117, 270, 607, 694
BccI	CCATC	2 cut(s)	281, 665
BceAI	ACGGC	4 cut(s)	61, 229, 311, 732
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BciT130I	CCWGG	1 cut(s)	528
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	2 cut(s)	102, 108
BglII	AGATCT	2 cut(s)	75, 517
BisI	GCNGC	6 cut(s)	131, 259, 262, 392, 596, 708
BlsI	GCNGC	6 cut(s)	132, 260, 263, 393, 597, 709
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	3 cut(s)	199, 523, 559
BmgT120I	GGNCC	3 cut(s)	199, 523, 559
BmiI	GGNNCC	4 cut(s)	6, 106, 399, 525
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	3 cut(s)	228, 345, 405
BsaBI	GATNNNNATC	2 cut(s)	183, 327
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaJI	CCNNGG	3 cut(s)	526, 734, 748
BsaXI	ACNNNNNCTCC	6 cut(s)	127, 157, 599, 629, 715, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 520
Bse118I	RCCGGY	3 cut(s)	10, 101, 107
Bse1I	ACTGG	2 cut(s)	129, 561
Bse3DI	GCAATG	3 cut(s)	55, 590, 717
Bse8I	GATNNNNATC	2 cut(s)	183, 327
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	526, 734, 748
BseGI	GGATG	2 cut(s)	238, 507
BseJI	GATNNNNATC	2 cut(s)	183, 327
BseLI	CCNNNNNNNGG	2 cut(s)	146, 520
BseMI	GCAATG	3 cut(s)	55, 590, 717
BseMII	CTCAG	3 cut(s)	219, 336, 401
BseNI	ACTGG	2 cut(s)	129, 561
BseXI	GCAGC	4 cut(s)	117, 270, 607, 694
Bsh1236I	CGCG	2 cut(s)	222, 275
BshFI	GGCC	2 cut(s)	139, 338
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	11, 102, 108, 395
BslFI	GGGAC	3 cut(s)	135, 173, 509
BslI	CCNNNNNNNGG	2 cut(s)	146, 520
BsmFI	GGGAC	3 cut(s)	135, 173, 509
BsmI	GAATGC	2 cut(s)	35, 716
BsnI	GGCC	2 cut(s)	139, 338
Bsp143I	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
BspACI	CCGC	8 cut(s)	8, 133, 171, 261, 308, 350, 392, 789
BspANI	GGCC	2 cut(s)	139, 338
BspCNI	CTCAG	3 cut(s)	220, 337, 400
BspFNI	CGCG	2 cut(s)	222, 275
BspLI	GGNNCC	4 cut(s)	6, 106, 399, 525
BspPI	GGATC	5 cut(s)	12, 173, 392, 405, 760
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	3 cut(s)	55, 590, 717
BsrFI	RCCGGY	3 cut(s)	10, 101, 107
BsrI	ACTGG	2 cut(s)	129, 561
BssAI	RCCGGY	3 cut(s)	10, 101, 107
BssECI	CCNNGG	3 cut(s)	526, 734, 748
BssMI	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
BssNI	GRCGYC	2 cut(s)	56, 105
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	281, 461
Bst6I	CTCTTC	2 cut(s)	209, 475
BstACI	GRCGYC	2 cut(s)	56, 105
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	4 cut(s)	228, 345, 387, 405
BstDSI	CCRYGG	1 cut(s)	748
BstF5I	GGATG	2 cut(s)	238, 507
BstFNI	CGCG	2 cut(s)	222, 275
BstH2I	RGCGCY	2 cut(s)	102, 108
BstHHI	GCGC	4 cut(s)	101, 107, 222, 275
BstKTI	GATC	6 cut(s)	7, 78, 181, 400, 520, 755
BstMBI	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 136, 270, 376, 473, 713
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	2 cut(s)	222, 275
BstV1I	GCAGC	4 cut(s)	117, 270, 607, 694
BstX2I	RGATCY	5 cut(s)	4, 75, 397, 517, 752
BstYI	RGATCY	5 cut(s)	4, 75, 397, 517, 752
BsuRI	GGCC	2 cut(s)	139, 338
BtgI	CCRYGG	1 cut(s)	748
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	238, 507
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	554, 702
Cac8I	GCNNGC	2 cut(s)	103, 109
CfoI	GCGC	4 cut(s)	101, 107, 222, 275
Cfr10I	RCCGGY	3 cut(s)	10, 101, 107
Cfr13I	GGNCC	3 cut(s)	199, 523, 559
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	37, 425, 723
CviAII	CATG	2 cut(s)	112, 422
CviQI	GTAC	3 cut(s)	37, 425, 723
DdeI	CTNAG	4 cut(s)	228, 345, 387, 405
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	6 cut(s)	6, 77, 180, 399, 519, 754
DpnII	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
Eam1104I	CTCTTC	2 cut(s)	209, 475
EarI	CTCTTC	2 cut(s)	209, 475
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	734
Eco47I	GGWCC	3 cut(s)	199, 523, 559
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	734
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	2 cut(s)	115, 425
FaqI	GGGAC	3 cut(s)	135, 173, 509
FatI	CATG	2 cut(s)	111, 421
FauI	CCCGC	1 cut(s)	301
FauNDI	CATATG	1 cut(s)	774
Fnu4HI	GCNGC	6 cut(s)	131, 259, 262, 392, 596, 708
FokI	GGATG	2 cut(s)	245, 514
Fsp4HI	GCNGC	6 cut(s)	131, 259, 262, 392, 596, 708
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	4 cut(s)	100, 106, 221, 274
GluI	GCNGC	6 cut(s)	131, 259, 262, 392, 596, 708
HaeII	RGCGCY	2 cut(s)	102, 108
HaeIII	GGCC	2 cut(s)	139, 338
HapII	CCGG	4 cut(s)	11, 102, 108, 395
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	4 cut(s)	101, 107, 222, 275
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	2 cut(s)	115, 425
Hin6I	GCGC	4 cut(s)	99, 105, 220, 273
HinP1I	GCGC	4 cut(s)	99, 105, 220, 273
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	184, 236, 328, 649
HpaII	CCGG	4 cut(s)	11, 102, 108, 395
HphI	GGTGA	3 cut(s)	34, 188, 750
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	4 cut(s)	73, 90, 183, 189
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	725
Hpy99I	CGWCG	4 cut(s)	58, 61, 244, 250
HpyAV	CCTTC	2 cut(s)	429, 681
HpyCH4III	ACNGT	2 cut(s)	281, 461
HpyCH4IV	ACGT	2 cut(s)	56, 162
HpyCH4V	TGCA	5 cut(s)	467, 595, 710, 772, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 136, 270, 376, 473, 713
HpyF3I	CTNAG	4 cut(s)	228, 345, 387, 405
HpySE526I	ACGT	2 cut(s)	56, 162
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	2 cut(s)	115, 425
HspAI	GCGC	4 cut(s)	99, 105, 220, 273
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	101, 107
KroNI	GCCGGC	2 cut(s)	103, 109
Kzo9I	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	4 cut(s)	117, 270, 607, 694
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	56, 162
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	6 cut(s)	6, 77, 180, 399, 519, 754
MboI	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
MboII	GAAGA	3 cut(s)	226, 492, 747
MflI	RGATCY	5 cut(s)	4, 75, 397, 517, 752
MluCI	AATT	4 cut(s)	507, 573, 577, 680
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	245, 643
MmeI	TCCRAC	1 cut(s)	66
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	2 cut(s)	101, 107
MseI	TTAA	3 cut(s)	300, 576, 636
MslI	CAYNNNNRTG	2 cut(s)	662, 763
MspA1I	CMGCKG	2 cut(s)	261, 308
MspI	CCGG	4 cut(s)	11, 102, 108, 395
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	2 cut(s)	35, 716
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	222, 275
MwoI	GCNNNNNNNGC	6 cut(s)	16, 136, 270, 376, 473, 713
NaeI	GCCGGC	2 cut(s)	103, 109
NarI	GGCGCC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
NgoMIV	GCCGGC	2 cut(s)	101, 107
NlaIII	CATG	2 cut(s)	115, 425
NlaIV	GGNNCC	4 cut(s)	6, 106, 399, 525
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	455
PctI	GAATGC	2 cut(s)	35, 716
PdiI	GCCGGC	2 cut(s)	103, 109
PfeI	GAWTC	2 cut(s)	184, 328
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	6 cut(s)	132, 260, 263, 393, 597, 709
PleI	GAGTC	2 cut(s)	244, 643
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	244, 643
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	4 cut(s)	6, 106, 399, 525
PspPI	GGNCC	3 cut(s)	199, 523, 559
PsuI	RGATCY	5 cut(s)	4, 75, 397, 517, 752
RsaI	GTAC	3 cut(s)	38, 426, 724
RsaNI	GTAC	3 cut(s)	37, 425, 723
RseI	CAYNNNNRTG	2 cut(s)	662, 763
SaqAI	TTAA	3 cut(s)	300, 576, 636
SatI	GCNGC	6 cut(s)	131, 259, 262, 392, 596, 708
Sau3AI	GATC	6 cut(s)	4, 75, 178, 397, 517, 752
Sau96I	GGNCC	3 cut(s)	199, 523, 559
SchI	GAGTC	2 cut(s)	245, 643
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	3 cut(s)	199, 523, 559
SmiMI	CAYNNNNRTG	2 cut(s)	662, 763
Sse9I	AATT	4 cut(s)	507, 573, 577, 680
SsiI	CCGC	8 cut(s)	8, 133, 171, 261, 308, 350, 392, 789
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	281, 461
TaiI	ACGT	2 cut(s)	59, 165
TaqI	TCGA	2 cut(s)	660, 699
TasI	AATT	4 cut(s)	507, 573, 577, 680
TauI	GCSGC	2 cut(s)	264, 394
TfiI	GAWTC	2 cut(s)	184, 328
Tru1I	TTAA	3 cut(s)	300, 576, 636
Tru9I	TTAA	3 cut(s)	300, 576, 636
TscAI	CASTG	2 cut(s)	561, 709
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	4 cut(s)	130, 258, 595, 707
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	42, 107, 518, 635
TspRI	CASTG	2 cut(s)	561, 709
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	199, 523, 559
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	2 cut(s)	507, 680
XspI	CTAG	1 cut(s)	477
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.