Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

68137849 .. 68141148

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTCCCGATGAACAGCGCCGGCGCCGGCATGGGAGGGGGACTGGGGCTGCGGAGGCCGAGTTTCGGGCAGTTTGGGGACGTTTCGGGGGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAGTCCGATGAGTTTGGACCACCGAGCGAGGAAGAGGCGCGATGCTGAGGATGAGTCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGGTAAATCGTTCTTTCAGTTTGGTTCAACTGCTAATACATTTTCAATCTCATTTCTTTGCACTGTGCACGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

121

Amino Acids

12.91

Weight (kDa)

6.25

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	2 cut(s)	243, 290
AciI	CCGC	5 cut(s)	8, 133, 192, 276, 290
AclWI	GGATC	2 cut(s)	12, 194
AcvI	CACGTG	1 cut(s)	360
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	317, 335
Alw21I	GWGCWC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	12, 194
AoxI	GGCC	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	130, 273
AspLEI	GCGC	4 cut(s)	101, 107, 243, 290
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	34, 209
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	117, 285
BceAI	ACGGC	1 cut(s)	61
BfoI	RGCGCY	2 cut(s)	102, 108
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	3 cut(s)	131, 274, 277
BlsI	GCNGC	3 cut(s)	132, 275, 278
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	6, 106
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	3 cut(s)	10, 101, 107
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	117, 285
Bsh1236I	CGCG	2 cut(s)	243, 290
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	11, 102, 108
BslFI	GGGAC	3 cut(s)	135, 173, 194
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	135, 173, 194
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	4, 75, 199
BspACI	CCGC	5 cut(s)	8, 133, 192, 276, 290
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	243, 290
BspLI	GGNNCC	2 cut(s)	6, 106
BspPI	GGATC	2 cut(s)	12, 194
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	3 cut(s)	10, 101, 107
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	3 cut(s)	10, 101, 107
BssMI	GATC	3 cut(s)	4, 75, 199
BssNI	GRCGYC	2 cut(s)	56, 105
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	2 cut(s)	56, 105
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	243, 290
BstH2I	RGCGCY	2 cut(s)	102, 108
BstHHI	GCGC	4 cut(s)	101, 107, 243, 290
BstKTI	GATC	3 cut(s)	7, 78, 202
BstMBI	GATC	3 cut(s)	4, 75, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 136, 285
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	2 cut(s)	243, 290
BstV1I	GCAGC	2 cut(s)	117, 285
BstX2I	RGATCY	2 cut(s)	4, 75
BstYI	RGATCY	2 cut(s)	4, 75
BsuRI	GGCC	1 cut(s)	139
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	103, 109
CfoI	GCGC	4 cut(s)	101, 107, 243, 290
Cfr10I	RCCGGY	3 cut(s)	10, 101, 107
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	2 cut(s)	130, 139
CviKI_1	RGCY	2 cut(s)	130, 139
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	249
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	3 cut(s)	6, 77, 201
DpnII	GATC	3 cut(s)	4, 75, 199
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	63, 113
FaqI	GGGAC	3 cut(s)	135, 173, 194
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	131, 274, 277
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	131, 274, 277
GlaI	GCGC	4 cut(s)	100, 106, 242, 289
GluI	GCNGC	3 cut(s)	131, 274, 277
HaeII	RGCGCY	2 cut(s)	102, 108
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	3 cut(s)	11, 102, 108
HhaI	GCGC	4 cut(s)	101, 107, 243, 290
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	4 cut(s)	99, 105, 241, 288
HinP1I	GCGC	4 cut(s)	99, 105, 241, 288
HinfI	GANTC	3 cut(s)	175, 205, 257
HpaII	CCGG	3 cut(s)	11, 102, 108
HphI	GGTGA	2 cut(s)	34, 209
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	3 cut(s)	73, 204, 210
Hpy188III	TCNNGA	2 cut(s)	88, 179
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	3 cut(s)	58, 61, 265
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	4 cut(s)	56, 162, 183, 359
HpyCH4V	TGCA	2 cut(s)	350, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 136, 285
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	4 cut(s)	56, 162, 183, 359
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	4 cut(s)	99, 105, 241, 288
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	101, 107
KroNI	GCCGGC	2 cut(s)	103, 109
Kzo9I	GATC	3 cut(s)	4, 75, 199
LpnPI	CCDG	6 cut(s)	5, 24, 64, 110, 115, 121
Lsp1109I	GCAGC	2 cut(s)	117, 285
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	4 cut(s)	56, 162, 183, 359
MalI	GATC	3 cut(s)	6, 77, 201
MboI	GATC	3 cut(s)	4, 75, 199
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	2 cut(s)	4, 75
MhlI	GDGCHC	1 cut(s)	359
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	214, 266
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	110, 129, 225, 231, 244
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	2 cut(s)	101, 107
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	3 cut(s)	11, 102, 108
Mva1269I	GAATGC	1 cut(s)	35
MvnI	CGCG	2 cut(s)	243, 290
MwoI	GCNNNNNNNGC	3 cut(s)	16, 136, 285
NaeI	GCCGGC	2 cut(s)	103, 109
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	3 cut(s)	4, 75, 199
NgoMIV	GCCGGC	2 cut(s)	101, 107
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	6, 106
NmeAIII	GCCGAG	1 cut(s)	165
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	2 cut(s)	103, 109
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	132, 275, 278
PleI	GAGTC	2 cut(s)	213, 265
PluTI	GGCGCC	1 cut(s)	108
PmaCI	CACGTG	1 cut(s)	360
PmlI	CACGTG	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	213, 265
Ppu21I	YACGTR	1 cut(s)	360
PspCI	CACGTG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	6, 106
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	4, 75
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	3 cut(s)	131, 274, 277
Sau3AI	GATC	3 cut(s)	4, 75, 199
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	214, 266
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	4 cut(s)	59, 165, 186, 362
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	1 cut(s)	220
SsiI	CCGC	5 cut(s)	8, 133, 192, 276, 290
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	4 cut(s)	59, 165, 186, 362
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	130, 273
TspDTI	ATGAA	2 cut(s)	42, 107
TspRI	CASTG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	220
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.