Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Reverse (-)

62798465 .. 62801645

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTTCCGATGAACAGCGCCGGCGCAGGCATGGGAGGGGGACTGGGGCTGCGGAGGCCGAGTTTCGGGCAGTTTGGGGACGTTTTGGGCGGTGGTGATCCGAATCCGATGAGTTTGGACCACCAAGCGAGGAAGAGGCGCGATGCTGAGGATGAGTCGTCGCCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGAACGGTTGTGATGGGAAACGGCTTAAAACAGCGGGGAGGTGTGGAGATGAGAATCCAGAGGCCAAAGCTGAGGCGGAAACGAGTTCAGGGAAGCCTGTGGAGCAGAACACTCAGCCGCCGGATCCACCTAAGCAGGACTATATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGTCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATTAGCGAAAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATCCAATCATTGCAGCGTCAAGTGGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATACACGAATGACTCCTGCCATCGAGGTGTTTCCTTCTAAAGAAGTAAGTCGTATATGTATACTAGTGAGAGTTTATATAGTCCCCCTCCATGCTTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

246

Amino Acids

26.89

Weight (kDa)

8.25

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	152 - 199	3.4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	157 - 202	1.5e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	2 cut(s)	222, 275
AciI	CCGC	7 cut(s)	8, 133, 171, 261, 308, 350, 392
AclWI	GGATC	4 cut(s)	12, 173, 392, 405
AcsI	RAATTY	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	38, 426
AfiI	CCNNNNNNNGG	2 cut(s)	146, 520
AgsI	TTSAA	1 cut(s)	629
AhlI	ACTAGT	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	4 cut(s)	344, 446, 476, 625
AluI	AGCT	4 cut(s)	344, 446, 476, 625
AlwI	GGATC	4 cut(s)	12, 173, 392, 405
AoxI	GGCC	2 cut(s)	137, 336
ApeKI	GCWGC	3 cut(s)	130, 258, 595
ApoI	RAATTY	1 cut(s)	507
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	4 cut(s)	101, 107, 222, 275
AspS9I	GGNCC	3 cut(s)	199, 523, 559
AsuHPI	GGTGA	2 cut(s)	34, 188
AvaII	GGWCC	3 cut(s)	199, 523, 559
BamHI	GGATCC	2 cut(s)	4, 397
BbvCI	CCTCAGC	2 cut(s)	228, 345
BbvI	GCAGC	3 cut(s)	117, 270, 607
BccI	CCATC	2 cut(s)	281, 665
BceAI	ACGGC	3 cut(s)	61, 229, 311
BciT130I	CCWGG	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	2 cut(s)	477, 701
BfoI	RGCGCY	1 cut(s)	102
BglII	AGATCT	2 cut(s)	75, 517
BisI	GCNGC	5 cut(s)	131, 259, 262, 392, 596
BlsI	GCNGC	5 cut(s)	132, 260, 263, 393, 597
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	3 cut(s)	199, 523, 559
BmgT120I	GGNCC	3 cut(s)	199, 523, 559
BmiI	GGNNCC	3 cut(s)	6, 399, 525
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	3 cut(s)	228, 345, 405
BsaBI	GATNNNNATC	2 cut(s)	183, 327
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	526
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 599, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 520
Bse118I	RCCGGY	2 cut(s)	10, 101
Bse1I	ACTGG	2 cut(s)	129, 561
Bse3DI	GCAATG	2 cut(s)	55, 590
Bse8I	GATNNNNATC	2 cut(s)	183, 327
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	238, 507
BseJI	GATNNNNATC	2 cut(s)	183, 327
BseLI	CCNNNNNNNGG	2 cut(s)	146, 520
BseMI	GCAATG	2 cut(s)	55, 590
BseMII	CTCAG	3 cut(s)	219, 336, 401
BseNI	ACTGG	2 cut(s)	129, 561
BseXI	GCAGC	3 cut(s)	117, 270, 607
Bsh1236I	CGCG	2 cut(s)	222, 275
BshFI	GGCC	2 cut(s)	139, 338
BsiSI	CCGG	3 cut(s)	11, 102, 395
BslFI	GGGAC	4 cut(s)	135, 173, 509, 704
BslI	CCNNNNNNNGG	2 cut(s)	146, 520
BsmFI	GGGAC	4 cut(s)	135, 173, 509, 704
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	139, 338
Bsp143I	GATC	5 cut(s)	4, 75, 178, 397, 517
BspACI	CCGC	7 cut(s)	8, 133, 171, 261, 308, 350, 392
BspANI	GGCC	2 cut(s)	139, 338
BspCNI	CTCAG	3 cut(s)	220, 337, 400
BspFNI	CGCG	2 cut(s)	222, 275
BspLI	GGNNCC	3 cut(s)	6, 399, 525
BspPI	GGATC	4 cut(s)	12, 173, 392, 405
BsrDI	GCAATG	2 cut(s)	55, 590
BsrFI	RCCGGY	2 cut(s)	10, 101
BsrI	ACTGG	2 cut(s)	129, 561
BssAI	RCCGGY	2 cut(s)	10, 101
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	4, 75, 178, 397, 517
BssNAI	GTATAC	1 cut(s)	698
BssNI	GRCGYC	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	281, 461
Bst6I	CTCTTC	2 cut(s)	209, 475
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	4 cut(s)	228, 345, 387, 405
BstF5I	GGATG	2 cut(s)	238, 507
BstFNI	CGCG	2 cut(s)	222, 275
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	4 cut(s)	101, 107, 222, 275
BstKTI	GATC	5 cut(s)	7, 78, 181, 400, 520
BstMBI	GATC	5 cut(s)	4, 75, 178, 397, 517
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 136, 270, 376, 473
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	2 cut(s)	222, 275
BstV1I	GCAGC	3 cut(s)	117, 270, 607
BstX2I	RGATCY	4 cut(s)	4, 75, 397, 517
BstYI	RGATCY	4 cut(s)	4, 75, 397, 517
BstZ17I	GTATAC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	139, 338
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	238, 507
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	2 cut(s)	103, 109
CfoI	GCGC	4 cut(s)	101, 107, 222, 275
Cfr10I	RCCGGY	2 cut(s)	10, 101
Cfr13I	GGNCC	3 cut(s)	199, 523, 559
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	37, 425
CviAII	CATG	3 cut(s)	112, 422, 728
CviQI	GTAC	2 cut(s)	37, 425
DdeI	CTNAG	4 cut(s)	228, 345, 387, 405
DpnI	GATC	5 cut(s)	6, 77, 180, 399, 519
DpnII	GATC	5 cut(s)	4, 75, 178, 397, 517
Eam1104I	CTCTTC	2 cut(s)	209, 475
EarI	CTCTTC	2 cut(s)	209, 475
EciI	GGCGGA	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	199, 523, 559
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	115, 425, 731
FaqI	GGGAC	4 cut(s)	135, 173, 509, 704
FatI	CATG	3 cut(s)	111, 421, 727
FauI	CCCGC	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	131, 259, 262, 392, 596
FokI	GGATG	2 cut(s)	245, 514
Fsp4HI	GCNGC	5 cut(s)	131, 259, 262, 392, 596
FspBI	CTAG	2 cut(s)	477, 701
GlaI	GCGC	4 cut(s)	100, 106, 221, 274
GluI	GCNGC	5 cut(s)	131, 259, 262, 392, 596
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	139, 338
HapII	CCGG	3 cut(s)	11, 102, 395
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	4 cut(s)	101, 107, 222, 275
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	115, 425, 731
Hin6I	GCGC	4 cut(s)	99, 105, 220, 273
HinP1I	GCGC	4 cut(s)	99, 105, 220, 273
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	184, 236, 328, 649
HpaII	CCGG	3 cut(s)	11, 102, 395
HphI	GGTGA	2 cut(s)	34, 188
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	4 cut(s)	73, 90, 183, 189
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	698
Hpy99I	CGWCG	4 cut(s)	58, 61, 244, 250
HpyAV	CCTTC	2 cut(s)	429, 681
HpyCH4III	ACNGT	2 cut(s)	281, 461
HpyCH4IV	ACGT	2 cut(s)	56, 162
HpyCH4V	TGCA	2 cut(s)	467, 595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 136, 270, 376, 473
HpyF3I	CTNAG	4 cut(s)	228, 345, 387, 405
HpySE526I	ACGT	2 cut(s)	56, 162
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	115, 425, 731
HspAI	GCGC	4 cut(s)	99, 105, 220, 273
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	4, 75, 178, 397, 517
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	3 cut(s)	117, 270, 607
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	477, 701
MaeII	ACGT	2 cut(s)	56, 162
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	6, 77, 180, 399, 519
MboI	GATC	5 cut(s)	4, 75, 178, 397, 517
MboII	GAAGA	2 cut(s)	226, 492
MflI	RGATCY	4 cut(s)	4, 75, 397, 517
MluCI	AATT	3 cut(s)	507, 573, 577
MlyI	GAGTC	2 cut(s)	245, 643
MmeI	TCCRAC	1 cut(s)	66
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	3 cut(s)	300, 576, 636
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	2 cut(s)	261, 308
MspI	CCGG	3 cut(s)	11, 102, 395
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	222, 275
MwoI	GCNNNNNNNGC	5 cut(s)	16, 136, 270, 376, 473
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	5 cut(s)	4, 75, 178, 397, 517
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	115, 425, 731
NlaIV	GGNNCC	3 cut(s)	6, 399, 525
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	184, 328
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	132, 260, 263, 393, 597
PleI	GAGTC	2 cut(s)	244, 643
PpsI	GAGTC	2 cut(s)	244, 643
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	6, 399, 525
PspPI	GGNCC	3 cut(s)	199, 523, 559
PsuI	RGATCY	4 cut(s)	4, 75, 397, 517
RsaI	GTAC	2 cut(s)	38, 426
RsaNI	GTAC	2 cut(s)	37, 425
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	300, 576, 636
SatI	GCNGC	5 cut(s)	131, 259, 262, 392, 596
Sau3AI	GATC	5 cut(s)	4, 75, 178, 397, 517
Sau96I	GGNCC	3 cut(s)	199, 523, 559
SchI	GAGTC	2 cut(s)	245, 643
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	214
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	3 cut(s)	199, 523, 559
SmiMI	CAYNNNNRTG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	3 cut(s)	507, 573, 577
SsiI	CCGC	7 cut(s)	8, 133, 171, 261, 308, 350, 392
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	477, 701
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	281, 461
TaiI	ACGT	2 cut(s)	59, 165
TaqI	TCGA	1 cut(s)	660
TasI	AATT	3 cut(s)	507, 573, 577
TauI	GCSGC	2 cut(s)	264, 394
TfiI	GAWTC	2 cut(s)	184, 328
Tru1I	TTAA	3 cut(s)	300, 576, 636
Tru9I	TTAA	3 cut(s)	300, 576, 636
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	3 cut(s)	130, 258, 595
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	42, 107, 518, 635
TspRI	CASTG	1 cut(s)	561
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	199, 523, 559
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	2 cut(s)	477, 701
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.