Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Forward (+)

5755470 .. 5758645

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATCCGCCGACGCTCGTAAACGAGTGCTCGTTCTCCAACGCCAATGCGACGTCGTTTCTCTCTGAGATCTGGCCGCTCCCGATGAACGGAAGCGGCGCGAGGGCCGGAGACTCCGGAGGAGCTTTGGGGCTGCGGAGGCCGAACTTCTCGCAGAGTTTCGCGCAGTTTGGGGACGTCTCGGGTGCGATTCGGGACGTCTTGGCCGGTAGTGATCCGAATCCGATGAGCTTGGATCACCGAGGCGGCGGAGGGCATGGCGGTGCCGCGAGGAAAAGGCGCGAGGCCGACGACGAGTCTCCAAAAAGCAGTGGCAATATTGGCGCGAGTGATTGTGATGGGAAACGGCTTAAAACATCAGCTCGCTGCAGAGATGAGAGTGCTCGCGAGTCGAAAGCCGAAGCGGAAACCAGCTCAGGCAAGCCGGCGGAGCAAAACGCTCAGCCGCCTGATCCGCCTAAGCAGGACTACATACATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGAGAGAAGATAAGCGAGAGGATGAAAATCCTCCAAGATCTGGTCCCTGGTTGTAACAAGGTTATTGGAAAAGCACTTGTGCTTGATGAGATAATTAATTACATCCAATCGCTACAGCGGCAGGTTGAGTTCCTGTCGATGAAGCTTGAAGCAGTTAATACAAGAATGAACCCTGGAATTGAGGCGTTTCCTTCTAAAGATTTCGGTCAACAAACATTCGATAATGCTGCAATGGCTTTCAGTACACAGCCTCCCAGGGAATATAGCCGCGGCAATTCACCCGAGTGGTTGCATATGCAGGTTGGTGGTGGTTTCAATAGAACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

288

Amino Acids

31.09

Weight (kDa)

7.7

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	170 - 217	4.4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	175 - 220	1.9e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	56, 180, 201
Acc36I	ACCTGC	2 cut(s)	646, 823
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
AccIII	TCCGGA	1 cut(s)	116
AclWI	GGATC	4 cut(s)	12, 209, 243, 446
AcoI	YGGCCR	2 cut(s)	74, 204
AcyI	GRCGYC	3 cut(s)	53, 177, 198
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	2 cut(s)	89, 574
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	2 cut(s)	683, 850
AhdI	GACNNNNNGTC	1 cut(s)	295
AjnI	CCWGG	3 cut(s)	580, 706, 788
AleI	CACNNNNGTG	1 cut(s)	817
AluBI	AGCT	8 cut(s)	125, 231, 362, 414, 485, 500, 530, 679
AluI	AGCT	8 cut(s)	125, 231, 362, 414, 485, 500, 530, 679
Alw21I	GWGCWC	2 cut(s)	32, 385
Alw26I	GTCTC	3 cut(s)	105, 184, 303
AlwI	GGATC	4 cut(s)	12, 209, 243, 446
Ama87I	CYCGRG	2 cut(s)	181, 815
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	5 cut(s)	74, 105, 140, 204, 285
ApeKI	GCWGC	3 cut(s)	133, 366, 761
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	4 cut(s)	101, 166, 282, 326
AspS9I	GGNCC	2 cut(s)	105, 577
AsuHPI	GGTGA	2 cut(s)	230, 804
AvaI	CYCGRG	2 cut(s)	181, 815
AvaII	GGWCC	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	32, 385
BbvI	GCAGC	3 cut(s)	120, 353, 748
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	3 cut(s)	582, 708, 790
BcoDI	GTCTC	3 cut(s)	105, 184, 303
BfaI	CTAG	2 cut(s)	486, 531
BfmI	CTRYAG	2 cut(s)	367, 647
BfuAI	ACCTGC	2 cut(s)	646, 823
BglII	AGATCT	2 cut(s)	69, 571
BlpI	GCTNAGC	1 cut(s)	441
Bme1390I	CCNGG	3 cut(s)	582, 708, 790
Bme18I	GGWCC	1 cut(s)	577
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	181, 815
BmgT120I	GGNCC	2 cut(s)	105, 577
BmiI	GGNNCC	3 cut(s)	6, 265, 579
BmrFI	CCNGG	3 cut(s)	582, 708, 790
Bpu10I	CCTNAGC	2 cut(s)	415, 459
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaBI	GATNNNNATC	2 cut(s)	219, 560
BsaHI	GRCGYC	3 cut(s)	53, 177, 198
BsaJI	CCNNGG	6 cut(s)	241, 580, 706, 788, 789, 802
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	769, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 574
Bse118I	RCCGGY	2 cut(s)	206, 424
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	2 cut(s)	219, 560
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	582, 708, 790
BseDI	CCNNGG	6 cut(s)	241, 580, 706, 788, 789, 802
BseGI	GGATG	2 cut(s)	561, 636
BseJI	GATNNNNATC	2 cut(s)	219, 560
BseLI	CCNNNNNNNGG	2 cut(s)	89, 574
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	57, 429, 455
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	120, 353, 748
Bsh1236I	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
BshFI	GGCC	5 cut(s)	76, 107, 142, 206, 287
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	32, 385
BsiHKCI	CYCGRG	2 cut(s)	181, 815
BsiSI	CCGG	4 cut(s)	108, 117, 207, 425
BslFI	GGGAC	3 cut(s)	188, 209, 563
BslI	CCNNNNNNNGG	2 cut(s)	89, 574
BsmAI	GTCTC	3 cut(s)	105, 184, 303
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	188, 209, 563
BsnI	GGCC	5 cut(s)	76, 107, 142, 206, 287
BsoBI	CYCGRG	2 cut(s)	181, 815
Bsp1286I	GDGCHC	2 cut(s)	32, 385
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp68I	TCGCGA	1 cut(s)	387
BspANI	GGCC	5 cut(s)	76, 107, 142, 206, 287
BspCNI	CTCAG	3 cut(s)	58, 428, 454
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
BspLI	GGNNCC	3 cut(s)	6, 265, 579
BspMAI	CTGCAG	1 cut(s)	371
BspMI	ACCTGC	2 cut(s)	646, 823
BspPI	GGATC	4 cut(s)	12, 209, 243, 446
BspT107I	GGYRCC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	2 cut(s)	206, 424
BssAI	RCCGGY	2 cut(s)	206, 424
BssECI	CCNNGG	6 cut(s)	241, 580, 706, 788, 789, 802
BssMI	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
BssNI	GRCGYC	3 cut(s)	53, 177, 198
Bst2UI	CCWGG	3 cut(s)	582, 708, 790
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	529
BstACI	GRCGYC	3 cut(s)	53, 177, 198
BstC8I	GCNNGC	4 cut(s)	364, 385, 422, 426
BstDEI	CTNAG	4 cut(s)	66, 415, 441, 459
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	2 cut(s)	561, 636
BstFNI	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
BstHHI	GCGC	4 cut(s)	101, 166, 282, 326
BstKTI	GATC	6 cut(s)	7, 72, 217, 238, 454, 574
BstMAI	GTCTC	3 cut(s)	105, 184, 303
BstMBI	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 321, 430, 454, 527, 652, 767
BstNI	CCWGG	3 cut(s)	582, 708, 790
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	580, 706, 788
BstSFI	CTRYAG	2 cut(s)	367, 647
BstUI	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
BstV1I	GCAGC	3 cut(s)	120, 353, 748
BstX2I	RGATCY	3 cut(s)	4, 69, 571
BstYI	RGATCY	3 cut(s)	4, 69, 571
BsuRI	GGCC	5 cut(s)	76, 107, 142, 206, 287
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	561, 636
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
BtuMI	TCGCGA	1 cut(s)	387
BveI	ACCTGC	2 cut(s)	646, 823
Cac8I	GCNNGC	4 cut(s)	364, 385, 422, 426
CfoI	GCGC	4 cut(s)	101, 166, 282, 326
Cfr10I	RCCGGY	2 cut(s)	206, 424
Cfr13I	GGNCC	2 cut(s)	105, 577
Cfr42I	CCGCGG	1 cut(s)	805
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	2 cut(s)	257, 476
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	4 cut(s)	66, 415, 441, 459
DpnI	GATC	6 cut(s)	6, 71, 216, 237, 453, 573
DpnII	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	2 cut(s)	74, 204
Eam1104I	CTCTTC	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	3 cut(s)	264, 443, 444
Eco47I	GGWCC	1 cut(s)	577
Eco88I	CYCGRG	2 cut(s)	181, 815
EcoRII	CCWGG	3 cut(s)	580, 706, 788
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	260, 479
FaiI	YATR	7 cut(s)	258, 473, 477, 798, 828, 830, 862
FaqI	GGGAC	3 cut(s)	188, 209, 563
FatI	CATG	2 cut(s)	256, 475
FauNDI	CATATG	1 cut(s)	828
FokI	GGATG	2 cut(s)	568, 623
FspBI	CTAG	2 cut(s)	486, 531
GlaI	GCGC	4 cut(s)	100, 165, 281, 325
HaeIII	GGCC	5 cut(s)	76, 107, 142, 206, 287
HapII	CCGG	4 cut(s)	108, 117, 207, 425
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	4 cut(s)	101, 166, 282, 326
Hin1I	GRCGYC	3 cut(s)	53, 177, 198
Hin1II	CATG	2 cut(s)	260, 479
Hin6I	GCGC	4 cut(s)	99, 164, 280, 324
HinP1I	GCGC	4 cut(s)	99, 164, 280, 324
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	5 cut(s)	113, 190, 220, 296, 389
HpaII	CCGG	4 cut(s)	108, 117, 207, 425
HphI	GGTGA	2 cut(s)	230, 804
Hpy166II	GTNNAC	3 cut(s)	22, 743, 779
Hpy188I	TCNGA	4 cut(s)	67, 219, 225, 482
Hpy188III	TCNNGA	4 cut(s)	82, 117, 194, 386
Hpy8I	GTNNAC	3 cut(s)	22, 743, 779
Hpy99I	CGWCG	5 cut(s)	16, 55, 58, 293, 296
HpyAV	CCTTC	2 cut(s)	483, 735
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	3 cut(s)	53, 177, 198
HpyCH4V	TGCA	5 cut(s)	369, 521, 764, 826, 832
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 321, 430, 454, 527, 652, 767
HpyF3I	CTNAG	4 cut(s)	66, 415, 441, 459
HpySE526I	ACGT	3 cut(s)	53, 177, 198
Hsp92I	GRCGYC	3 cut(s)	53, 177, 198
Hsp92II	CATG	2 cut(s)	260, 479
HspAI	GCGC	4 cut(s)	99, 164, 280, 324
Kpn2I	TCCGGA	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
KspI	CCGCGG	1 cut(s)	805
Kzo9I	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
LmnI	GCTCC	3 cut(s)	84, 122, 430
Lsp1109I	GCAGC	3 cut(s)	120, 353, 748
MaeI	CTAG	2 cut(s)	486, 531
MaeII	ACGT	3 cut(s)	53, 177, 198
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	6 cut(s)	6, 71, 216, 237, 453, 573
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
MboII	GAAGA	2 cut(s)	546, 553
MflI	RGATCY	3 cut(s)	4, 69, 571
MhlI	GDGCHC	2 cut(s)	32, 385
MluCI	AATT	4 cut(s)	627, 631, 711, 808
MlyI	GAGTC	3 cut(s)	107, 305, 398
MmeI	TCCRAC	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	424
MseI	TTAA	3 cut(s)	351, 630, 690
MslI	CAYNNNNRTG	2 cut(s)	261, 817
MspA1I	CMGCKG	2 cut(s)	652, 804
MspI	CCGG	4 cut(s)	108, 117, 207, 425
MspR9I	CCNGG	3 cut(s)	582, 708, 790
MvaI	CCWGG	3 cut(s)	582, 708, 790
MvnI	CGCG	7 cut(s)	101, 164, 269, 282, 326, 387, 804
MwoI	GCNNNNNNNGC	7 cut(s)	139, 321, 430, 454, 527, 652, 767
NaeI	GCCGGC	1 cut(s)	426
NdeI	CATATG	1 cut(s)	828
NdeII	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
NgoMIV	GCCGGC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	260, 479
NlaIV	GGNNCC	3 cut(s)	6, 265, 579
NruI	TCGCGA	1 cut(s)	387
NspI	RCATGY	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	817
PasI	CCCWGGG	1 cut(s)	789
PciI	ACATGT	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	190, 220
PflMI	CCANNNNNTGG	1 cut(s)	574
PleI	GAGTC	3 cut(s)	107, 304, 397
PpsI	GAGTC	3 cut(s)	107, 304, 397
PscI	ACATGT	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	630
Psp6I	CCWGG	3 cut(s)	580, 706, 788
PspGI	CCWGG	3 cut(s)	580, 706, 788
PspN4I	GGNNCC	3 cut(s)	6, 265, 579
PspPI	GGNCC	2 cut(s)	105, 577
PstI	CTGCAG	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	4, 69, 571
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	2 cut(s)	261, 817
SacII	CCGCGG	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	351, 630, 690
Sau3AI	GATC	6 cut(s)	4, 69, 214, 235, 451, 571
Sau96I	GGNCC	2 cut(s)	105, 577
SchI	GAGTC	3 cut(s)	107, 305, 398
ScrFI	CCNGG	3 cut(s)	582, 708, 790
SduI	GDGCHC	2 cut(s)	32, 385
SfcI	CTRYAG	2 cut(s)	367, 647
Sfr303I	CCGCGG	1 cut(s)	805
SgrBI	CCGCGG	1 cut(s)	805
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	261, 817
Sse9I	AATT	4 cut(s)	627, 631, 711, 808
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	486, 531
StyD4I	CCNGG	3 cut(s)	580, 706, 788
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	3 cut(s)	56, 180, 201
TaqI	TCGA	3 cut(s)	392, 671, 753
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	4 cut(s)	627, 631, 711, 808
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	8 cut(s)	79, 99, 249, 269, 448, 655, 804, 807
TfiI	GAWTC	2 cut(s)	190, 220
Tru1I	TTAA	3 cut(s)	351, 630, 690
Tru9I	TTAA	3 cut(s)	351, 630, 690
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	3 cut(s)	133, 366, 761
TspDTI	ATGAA	4 cut(s)	101, 572, 689, 716
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	577
VspI	ATTAAT	1 cut(s)	630
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	2 cut(s)	486, 531
ZraI	GACGTC	3 cut(s)	54, 178, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.