Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

22264385 .. 22266079

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTTTATCACTCGAGTTTTGTGGATGAAGAAGGAGTAACAAAGGCATGTGGTTGTCCATTGCTTCCTCTCAAGAGTCATATAAAAGGTCCTGCACCTGTTTCAGAACAAGATAAAACTGATATAGTAGACGAGGCAATCACCTTCTTTCGTGCTAATGTCTTCTTCACAAACTTTGATATCAAAAGTCCTGCTGATAAGCTCCTTATTTACTTGACGTTTTATATAAATGTGGCGTTAAAGAGGCTTGAAGGCTGTAGAACATTGGCTGTTGGAACTAAAGCGATTATCAACTTGGGTTTAGAAGATATTCCTGTTCCTGGAGAAACTGGCTTTCCTTTCCCAGGTCTCTTTTCGCTTCCGCAGTCCCAGGACGAAGCAGAGCTTTTCAGGAACTATCTTAAGCAGGTTCGAGAGGAGACAAGTGGGAGGTTACTGAGTGTAGCATATAGAGCCAACGGGACACCAAATAAATGGTGGCTTGCATTCGCCAAGAGGAAATTCATGAACGTGGTCGTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

174

Amino Acids

19.49

Weight (kDa)

7.68

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 170	9.6e-63	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	320, 344
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	3 cut(s)	319, 343, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	202, 385
AluI	AGCT	2 cut(s)	202, 385
Alw26I	GTCTC	2 cut(s)	353, 413
Ama87I	CYCGRG	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	154
BciT130I	CCWGG	3 cut(s)	321, 345, 371
BcoDI	GTCTC	2 cut(s)	353, 413
BfmI	CTRYAG	1 cut(s)	256
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	397
Bme1390I	CCNGG	3 cut(s)	321, 345, 371
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	3 cut(s)	321, 345, 371
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	343, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 344
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	3 cut(s)	321, 345, 371
BseDI	CCNNGG	2 cut(s)	343, 369
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	320, 344
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	352, 475
BslI	CCNNNNNNNGG	2 cut(s)	320, 344
BsmAI	GTCTC	2 cut(s)	353, 413
BsmFI	GGGAC	2 cut(s)	352, 475
BsmI	GAATGC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	13
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	504
BspMI	ACCTGC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	343, 369
Bst2UI	CCWGG	3 cut(s)	321, 345, 371
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	437
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	31
BstMAI	GTCTC	2 cut(s)	353, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	3 cut(s)	321, 345, 371
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	319, 343, 369
BstSFI	CTRYAG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	2 cut(s)	48, 505
CviJI	RGCY	8 cut(s)	202, 247, 255, 269, 333, 385, 455, 481
CviKI_1	RGCY	8 cut(s)	202, 247, 255, 269, 333, 385, 455, 481
DdeI	CTNAG	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	319, 343, 369
EcoRV	GATATC	1 cut(s)	181
FaeI	CATG	2 cut(s)	51, 508
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	2 cut(s)	352, 475
FatI	CATG	2 cut(s)	47, 504
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	342
Hin1II	CATG	2 cut(s)	51, 508
HinfI	GANTC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	4 cut(s)	73, 391, 413, 505
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	26, 154, 245
HpyCH4IV	ACGT	2 cut(s)	218, 510
HpyCH4V	TGCA	2 cut(s)	95, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	2 cut(s)	218, 510
Hsp92II	CATG	2 cut(s)	51, 508
LmnI	GCTCC	1 cut(s)	207
MaeII	ACGT	2 cut(s)	218, 510
MaeIII	GTNAC	2 cut(s)	37, 432
MboII	GAAGA	4 cut(s)	41, 154, 157, 317
MluCI	AATT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	78, 127, 237, 409, 423, 489
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	239, 402
MslI	CAYNNNNRTG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	321, 345, 371
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	3 cut(s)	321, 345, 371
MwoI	GCNNNNNNNGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	51, 508
NspI	RCATGY	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	13
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	319
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	319, 343, 369
PspGI	CCWGG	3 cut(s)	319, 343, 369
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	239, 402
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	321, 345, 371
SfcI	CTRYAG	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	3 cut(s)	13, 71, 401
SmoI	CTYRAG	3 cut(s)	13, 71, 401
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	319, 343, 369
TaiI	ACGT	2 cut(s)	221, 513
TaqI	TCGA	2 cut(s)	14, 412
TasI	AATT	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	239, 402
Tru9I	TTAA	2 cut(s)	239, 402
TspDTI	ATGAA	3 cut(s)	42, 493, 521
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.