Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000864.1

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Forward (+)

32114 .. 34107

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000864.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgatccgactcgttcaacccactgataccaatcgcaatagcgaaggctctgtctttctcatgatctcatctctgaagctcaaccatttccaaacctcttcggctgctttattacatcaggtttatcactctagttttgtagatgacgaaggaattactaaagcttgtgggttccctctgctgcctttgaaaagccacataaagggtcctgctccagtttcagatctagataggactgatattgttgatgaagcaattacattctttcgcgctaatgtcttctttagaaactttgatgtcaagagctcggctgataagcttctcatttatctgacattctacattaatgtggctttgaagaggctggaaggtcgcagaactttggctgaaggtaccaaagccattattaatctgggtctcgaaaaagtccctgtgcccggagagccaggtttccctttgccaggcctttttcctgtccctcaatccgacgaggaagcagaattgctgaggaattatttgaggcagataagggaggaagcaagtgggagattgttgagtgttgcttataaatctaatgggactcctaataagtggtggttggcatttgccaaaaggaaatttatgaacaccattcttccatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

214

Amino Acids

24.01

Weight (kDa)

9.18

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	2 cut(s)	95, 408
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	202, 437, 461
AgsI	TTSAA	3 cut(s)	17, 190, 358
AjnI	CCWGG	2 cut(s)	445, 460
AluBI	AGCT	4 cut(s)	79, 164, 306, 319
AluI	AGCT	4 cut(s)	79, 164, 306, 319
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	104, 181
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AseI	ATTAAT	2 cut(s)	345, 408
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	91, 168
BciT130I	CCWGG	2 cut(s)	447, 462
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	132, 227
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	105, 182
BlsI	GCNGC	2 cut(s)	106, 183
Bme1390I	CCNGG	3 cut(s)	438, 447, 462
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	173, 207, 394
BmrFI	CCNGG	3 cut(s)	438, 447, 462
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 437, 461
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	447, 462
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	202, 437, 461
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	91, 168
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	3 cut(s)	413, 461, 592
BslI	CCNNNNNNNGG	3 cut(s)	202, 437, 461
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	3 cut(s)	413, 461, 592
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	308, 438
Bsp143I	GATC	3 cut(s)	3, 63, 223
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	2 cut(s)	60, 641
BspLI	GGNNCC	3 cut(s)	173, 207, 394
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	3, 63, 223
Bst2UI	CCWGG	2 cut(s)	447, 462
Bst6I	CTCTTC	2 cut(s)	103, 353
BstDEI	CTNAG	1 cut(s)	506
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	6, 66, 226
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	3, 63, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	447, 462
BstSCI	CCNGG	3 cut(s)	436, 445, 460
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	91, 168
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	21
CciI	TCATGA	2 cut(s)	60, 641
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	61, 642
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	3 cut(s)	5, 65, 225
DpnII	GATC	3 cut(s)	3, 63, 223
Eam1104I	CTCTTC	2 cut(s)	103, 353
EarI	CTCTTC	2 cut(s)	103, 353
Ecl136II	GAGCTC	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	95, 408
EcoICRI	GAGCTC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	445, 460
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	2 cut(s)	64, 645
FaiI	YATR	5 cut(s)	62, 200, 567, 623, 643
FaqI	GGGAC	3 cut(s)	413, 461, 592
FatI	CATG	2 cut(s)	60, 641
Fnu4HI	GCNGC	2 cut(s)	105, 182
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	105, 182
FspBI	CTAG	2 cut(s)	132, 227
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	105, 182
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	64, 645
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	2 cut(s)	162, 317
HinfI	GANTC	2 cut(s)	9, 580
HpaII	CCGG	1 cut(s)	438
Hpy188I	TCNGA	5 cut(s)	8, 75, 223, 333, 487
Hpy188III	TCNNGA	5 cut(s)	61, 227, 301, 419, 642
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	4 cut(s)	38, 143, 362, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	64, 645
HspAI	GCGC	1 cut(s)	270
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	3, 63, 223
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	91, 168
MaeI	CTAG	2 cut(s)	132, 227
MalI	GATC	3 cut(s)	5, 65, 225
MboI	GATC	3 cut(s)	3, 63, 223
MboII	GAAGA	4 cut(s)	90, 271, 370, 626
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	308, 438
MluCI	AATT	5 cut(s)	153, 255, 500, 511, 617
MlyI	GAGTC	2 cut(s)	3, 574
MmeI	TCCRAC	2 cut(s)	31, 510
MnlI	CCTC	8 cut(s)	106, 186, 354, 484, 489, 501, 513, 526
MseI	TTAA	2 cut(s)	345, 408
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	3 cut(s)	438, 447, 462
MvaI	CCWGG	2 cut(s)	447, 462
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	3, 63, 223
NlaIII	CATG	2 cut(s)	64, 645
NlaIV	GGNNCC	3 cut(s)	173, 207, 394
NmeAIII	GCCGAG	1 cut(s)	287
PagI	TCATGA	2 cut(s)	60, 641
PceI	AGGCCT	1 cut(s)	465
PkrI	GCNGC	2 cut(s)	106, 183
PleI	GAGTC	2 cut(s)	3, 574
PpsI	GAGTC	2 cut(s)	3, 574
PpuMI	RGGWCCY	1 cut(s)	206
PshBI	ATTAAT	2 cut(s)	345, 408
PsiI	TTATAA	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	445, 460
PspGI	CCWGG	2 cut(s)	445, 460
PspN4I	GGNNCC	3 cut(s)	173, 207, 394
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	345, 408
SatI	GCNGC	2 cut(s)	105, 182
Sau3AI	GATC	3 cut(s)	3, 63, 223
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	2 cut(s)	3, 574
ScrFI	CCNGG	3 cut(s)	438, 447, 462
SduI	GDGCHC	2 cut(s)	308, 438
SetI	ASST	9 cut(s)	81, 98, 123, 166, 308, 321, 373, 394, 451
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	153, 255, 500, 511, 617
SseBI	AGGCCT	1 cut(s)	465
SspMI	CTAG	2 cut(s)	132, 227
SstI	GAGCTC	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	436, 445, 460
TaqI	TCGA	1 cut(s)	420
TasI	AATT	5 cut(s)	153, 255, 500, 511, 617
Tru1I	TTAA	2 cut(s)	345, 408
Tru9I	TTAA	2 cut(s)	345, 408
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	2 cut(s)	104, 181
TspDTI	ATGAA	2 cut(s)	264, 638
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	206
VspI	ATTAAT	2 cut(s)	345, 408
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	1 cut(s)	617
XbaI	TCTAGA	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	2 cut(s)	132, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.