Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

40247254 .. 40247754

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCAAGAACTTCCAGCCTCAAATACTTCTCACTACTAATTTGTTCACTTGCCATTGTTCAAATGACATTGGCAGGAGATCCAGACATTCTTAGTGACTTTGTTGCGCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACCGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAACCTTTCACACAGTACTGAATGCAACCTCAGCTGAGTTCCCTGCTCTTAATGGGCAGAGTGTTTCATATGCCGTCCATATATTCCCAGCTGTCACTGCTAACCCACCACACACTCATCCTCGCTCCGCTGAGCTCCTCTTCCTTGTTGACGGAAGCCTTGAAGTTGGCTTTGTCGACACAAAGAATAACCTCTTTACTCAGACTCTTCAGGCAGGTGACCTGTTTGTTATTCCCAAGGGACTCGTGCACTTCCAATATAATGCTGACTCAGAAAACCCTACTATAGCACACTACTACATATATAGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

166

Amino Acids

18.1

Weight (kDa)

5.31

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	68 - 154	4.3e-23	Cupin
Cupin_2	PF07883	95 - 156	9.5e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	9, 65, 350
AluBI	AGCT	3 cut(s)	221, 278, 322
AluI	AGCT	3 cut(s)	221, 278, 322
Alw21I	GWGCWC	2 cut(s)	324, 438
Alw26I	GTCTC	1 cut(s)	171
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	186, 324
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	324, 438
BbvCI	CCTCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	5 cut(s)	213, 231, 309, 401, 471
BseRI	GAGGAG	2 cut(s)	189, 314
BseSI	GKGCMC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	324, 438
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	186, 324, 438
Bsp143I	GATC	1 cut(s)	82
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	315
BspCNI	CTCAG	5 cut(s)	214, 230, 310, 400, 470
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	127, 202
Bst6I	CTCTTC	2 cut(s)	332, 399
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	6 cut(s)	95, 217, 222, 318, 387, 457
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 284
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	9 cut(s)	5, 21, 184, 221, 278, 322, 345, 357, 496
CviKI_1	RGCY	9 cut(s)	5, 21, 184, 221, 278, 322, 345, 357, 496
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	6 cut(s)	95, 217, 222, 318, 387, 457
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	332, 399
EarI	CTCTTC	2 cut(s)	332, 399
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	186, 324
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	2 cut(s)	186, 324
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	160
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	363
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	2 cut(s)	186, 324
GlaI	GCGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	337, 364
HindII	GTYRAC	2 cut(s)	337, 364
HinfI	GANTC	3 cut(s)	391, 429, 455
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	4 cut(s)	50, 337, 364, 436
Hpy188I	TCNGA	2 cut(s)	390, 460
Hpy188III	TCNNGA	2 cut(s)	9, 86
Hpy8I	GTNNAC	4 cut(s)	50, 337, 364, 436
HpyCH4III	ACNGT	2 cut(s)	127, 202
HpyCH4V	TGCA	2 cut(s)	212, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 284
HpyF3I	CTNAG	6 cut(s)	95, 217, 222, 318, 387, 457
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	2 cut(s)	317, 327
LpnPI	CCDG	9 cut(s)	31, 63, 99, 166, 243, 288, 383, 387, 422
MaeIII	GTNAC	3 cut(s)	98, 280, 404
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	133, 319, 386
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	3 cut(s)	186, 324, 438
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	385, 423, 449
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	32, 123, 167, 226, 318, 335, 389
MseI	TTAA	2 cut(s)	237, 499
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	3 cut(s)	221, 278, 317
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	218, 284
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	3 cut(s)	98, 280, 404
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	214
PleI	GAGTC	3 cut(s)	385, 423, 449
PpsI	GAGTC	3 cut(s)	385, 423, 449
Psp124BI	GAGCTC	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	2 cut(s)	221, 278
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	237, 499
Sau3AI	GATC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	3 cut(s)	385, 423, 449
SduI	GDGCHC	3 cut(s)	186, 324, 438
SetI	ASST	8 cut(s)	194, 218, 223, 280, 324, 381, 406, 411
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	127, 202
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	237, 499
Tru9I	TTAA	2 cut(s)	237, 499
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	3 cut(s)	98, 280, 404
Tsp45I	GTSAC	3 cut(s)	98, 280, 404
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	434
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.