Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

28674619 .. 28676925

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33280.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTTTATCACTCTAGTTTTGTGGATGAGGAAGGAATTACTAAAGCTTGTGGGTTCCCTCTGCTGCCTTTGAAAAGCCATATAAAGGGTCCTGCTCCTGTTTCAGAACAAGATAGGACTGATATTGTCGATGAGGCAATTACATTCTTCCGCGCCAATGTTTTCTTTAGAAACTTTGATATCAAGAGCTCTGCCGATAAGCTGTTGATTTATCTCACATTCTACATTAATGTGGCTTTGAAGAGGCTGGAAGGTTGCAGAACTTTGGCTGAAGGTACCAAGGCGATCATTAATTTAGGTCTGGAAAAGGTTCCTGTGCCTGGAGAGCCAGGTTTCCCTTTGCCGGGCCTCTTTCCTTTGCCTCAATCTGACAAGGAAGCAGAATTGCTCCGAAATTATTTGAAGCAGATAAGGGAAGAAGCAAGTGGGAGATTGTTGAGCGTTGCTTATAAATCTAATGGGACTCCTAATAAATGGTGGTTAGCATTTGCGAAAAGGAAATTCATGAACATAATTGTTCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

176

Amino Acids

19.66

Weight (kDa)

9.06

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 170	2.7e-64	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	4 cut(s)	85, 320, 343, 344
AgsI	TTSAA	3 cut(s)	73, 241, 403
AjnI	CCWGG	2 cut(s)	319, 328
AluBI	AGCT	3 cut(s)	47, 189, 202
AluI	AGCT	3 cut(s)	47, 189, 202
Alw21I	GWGCWC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	2 cut(s)	228, 291
Asp700I	GAANNNNTTC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	89, 346
AsuC2I	CCSGG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	321, 330
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	321, 330, 345
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 346
BmiI	GGNNCC	4 cut(s)	56, 90, 277, 312
BmrFI	CCNGG	3 cut(s)	321, 330, 345
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 320, 343, 344
BseBI	CCWGG	2 cut(s)	321, 330
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	85, 320, 343, 344
BseXI	GCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	85, 320, 343, 344
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	2 cut(s)	504, 524
BspLI	GGNNCC	4 cut(s)	56, 90, 277, 312
BspT107I	GGYRCC	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	321, 330
Bst6I	CTCTTC	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	2 cut(s)	321, 330
BstSCI	CCNGG	3 cut(s)	319, 328, 343
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	504, 524
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	89, 346
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	505, 525
CviJI	RGCY	9 cut(s)	47, 78, 189, 202, 236, 247, 269, 328, 348
CviKI_1	RGCY	9 cut(s)	47, 78, 189, 202, 236, 247, 269, 328, 348
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	319, 328
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	508, 528
FaiI	YATR	6 cut(s)	81, 83, 450, 506, 512, 526
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	504, 524
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	508, 528
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	106, 370, 392
Hpy188III	TCNNGA	4 cut(s)	184, 302, 505, 525
HpyAV	CCTTC	3 cut(s)	26, 245, 266
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	508, 528
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	100, 393
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	139, 253, 428
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	7 cut(s)	36, 138, 292, 383, 394, 500, 513
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	6 cut(s)	22, 69, 127, 237, 359, 372
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	228, 291
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	321, 330, 345
MvaI	CCWGG	2 cut(s)	321, 330
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	2 cut(s)	508, 528
NlaIV	GGNNCC	4 cut(s)	56, 90, 277, 312
PagI	TCATGA	2 cut(s)	504, 524
PdmI	GAANNNNTTC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	2 cut(s)	228, 291
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	319, 328
PspGI	CCWGG	2 cut(s)	319, 328
PspN4I	GGNNCC	4 cut(s)	56, 90, 277, 312
PspPI	GGNCC	2 cut(s)	89, 346
PspPPI	RGGWCCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	228, 291
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	89, 346
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	3 cut(s)	321, 330, 345
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	49, 191, 204, 256, 277, 301, 312, 334
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	36, 138, 292, 383, 394, 500, 513
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	3 cut(s)	319, 328, 343
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	1 cut(s)	129
TasI	AATT	7 cut(s)	36, 138, 292, 383, 394, 500, 513
Tru1I	TTAA	2 cut(s)	228, 291
Tru9I	TTAA	2 cut(s)	228, 291
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	493, 521
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	2 cut(s)	228, 291
XapI	RAATTY	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.