Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

67481630 .. 67484530

Gene Structure 2901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTTATCACTCTAGTTTTGTAGATGACGAAGGAATTACTAAAGCTTGTGGGTTCCCTCTGCTGCCTTTGAAAAGCCACATAAAGGGTCCTGCTCCAGTTTCAGATCTAGATAGGACTGATATTGTTGATGAAGCAATTACATTCTTTCGCGCTAATGTCTTCTTTAGAAACTTTGATGTCAAGAGCTCGGCTGATAAGCTTCTCATTTATCTGACATTCTACATTAATGTGGCTTTGAAGAGGCTGGAAGGTCGCAGAACTTTGGCTGAAGGTACCAAAGCCATTATTAATCTGGGTCTCGAAAAAGTCCCTGTGCCCGGAGAGCCAGGTTTCCCTTTGCCAGGCCTTTTTCCTGTCCCTCAATCCGACGAGGAAGCAGGTGAAGTTTCATTTTTCTTTGCTTGCCTTTTTTCTAGTGTAGGGAGCTGCTTTTGTGAAGTGTTGAGAAATGCAGTTATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

155

Amino Acids

17.05

Weight (kDa)

5.17

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 137	2.4e-42	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	3 cut(s)	85, 320, 344
AgsI	TTSAA	2 cut(s)	73, 241
AjnI	CCWGG	2 cut(s)	328, 343
AluBI	AGCT	4 cut(s)	47, 189, 202, 429
AluI	AGCT	4 cut(s)	47, 189, 202, 429
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	64, 429
AseI	ATTAAT	2 cut(s)	228, 291
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	51, 416
BciT130I	CCWGG	2 cut(s)	330, 345
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	3 cut(s)	15, 110, 417
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	65, 430
BlsI	GCNGC	2 cut(s)	66, 431
Bme1390I	CCNGG	3 cut(s)	321, 330, 345
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	56, 90, 277
BmrFI	CCNGG	3 cut(s)	321, 330, 345
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 320, 344
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	330, 345
BseLI	CCNNNNNNNGG	3 cut(s)	85, 320, 344
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	51, 416
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	296, 344
BslI	CCNNNNNNNGG	3 cut(s)	85, 320, 344
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	296, 344
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	191, 321
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	56, 90, 277
BspMI	ACCTGC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	106
Bst2UI	CCWGG	2 cut(s)	330, 345
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	2 cut(s)	330, 345
BstSCI	CCNGG	3 cut(s)	319, 328, 343
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	51, 416
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	406
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	276
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	328, 343
EcoT38I	GRGCYC	1 cut(s)	191
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	2 cut(s)	296, 344
Fnu4HI	GCNGC	2 cut(s)	65, 430
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	65, 430
FspBI	CTAG	3 cut(s)	15, 110, 417
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	65, 430
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	2 cut(s)	45, 200
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	106, 216, 370
Hpy188III	TCNNGA	3 cut(s)	110, 184, 302
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	26, 245, 266
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	100, 426
Lsp1109I	GCAGC	2 cut(s)	51, 416
MaeI	CTAG	3 cut(s)	15, 110, 417
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	154, 253
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	191, 321
MluCI	AATT	2 cut(s)	36, 138
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	69, 237, 367, 372
MseI	TTAA	2 cut(s)	228, 291
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	3 cut(s)	321, 330, 345
MvaI	CCWGG	2 cut(s)	330, 345
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	56, 90, 277
NmeAIII	GCCGAG	1 cut(s)	170
PaqCI	CACCTGC	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	66, 431
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	2 cut(s)	228, 291
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	328, 343
PspGI	CCWGG	2 cut(s)	328, 343
PspN4I	GGNNCC	3 cut(s)	56, 90, 277
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	228, 291
SatI	GCNGC	2 cut(s)	65, 430
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	321, 330, 345
SduI	GDGCHC	2 cut(s)	191, 321
SetI	ASST	8 cut(s)	49, 191, 204, 256, 277, 334, 385, 431
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	36, 138
SseBI	AGGCCT	1 cut(s)	348
SspMI	CTAG	3 cut(s)	15, 110, 417
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	319, 328, 343
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	36, 138
Tru1I	TTAA	2 cut(s)	228, 291
Tru9I	TTAA	2 cut(s)	228, 291
TseI	GCWGC	2 cut(s)	64, 429
TspDTI	ATGAA	2 cut(s)	147, 381
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	2 cut(s)	228, 291
XagI	CCTNNNNNAGG	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	3 cut(s)	15, 110, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.