Rorug05G0332600

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
40252745 .. 40253546
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0332600.1

Sequence Viewer

Length: 621 bp
ATGGCTTCAAGAACTTCAAGCCTCAAATTCTTCTCACTACTAATTTCTTCACTTGCCATTGTTCAAATGGCAATGGCAGACCCGGACATTCTTACCGATTTCATTGCCCCAAATAAGACAGTAGATGGAAACTTCTTCACATTCACGGGAATGCGTGTTCTTGTTGGTGGAGACGAGCCTAAAACTTTCACAGTATTGAAGGCAACCTTGGCAGAGTTTCCTGCTCTAAATGGGCAGAGTGTTTCATATGCAGTCCTTGAATTCCCAGCTGGCACTACTAATCCACCACACACTCATCCTCGCTCTGCCGAGCTCCTCTTCCTCATTGAGGGTGCTCTTGAAGTTTGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGACAGGTGACCTGTTTGTGTTTCCCAAGGGACTTGTGCACTACCAATACAATGCTGATTCACAAAACCCTGCTCTAGCAATCTCTGCCTTTGGAAGTGCAAGTGCCGGAACTGTGTCAATCCCTACCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTCAAGACTGATGTTGTCACGCCCCGAATTTTGAATAACAAATTCAAATCCGAAACATGA

Protein Analysis

206

Amino Acids

22.22

Weight (kDa)

5.07

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 61 - 192 2.9e-30 Cupin
Cupin_2 PF07883 85 - 158 1.1e-13 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AcsI RAATTY 4 cut(s) 26, 260, 588, 602
AcuI CTGAAG 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 9 cut(s) 9, 18, 65, 199, 260, 341, 565, 595, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 2 cut(s) 269, 313
AluI AGCT 2 cut(s) 269, 313
Alw21I GWGCWC 3 cut(s) 315, 337, 429
Alw26I GTCTC 1 cut(s) 165
Alw44I GTGCAC 1 cut(s) 425
ApaLI GTGCAC 1 cut(s) 425
ApoI RAATTY 4 cut(s) 26, 260, 588, 602
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 3 cut(s) 315, 337, 429
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 207, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 2 cut(s) 78, 102
BseCI ATCGAT 1 cut(s) 537
BseDI CCNNGG 2 cut(s) 207, 414
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 78, 102
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 537
BsiHKAI GWGCWC 3 cut(s) 315, 337, 429
BsiSI CCGG 2 cut(s) 83, 495
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 156
Bsp1286I GDGCHC 3 cut(s) 315, 337, 429
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 537
BsrDI GCAATG 2 cut(s) 78, 102
BssECI CCNNGG 2 cut(s) 207, 414
BssT1I CCWWGG 2 cut(s) 207, 414
Bst4CI ACNGT 3 cut(s) 121, 193, 502
Bst6I CTCTTC 2 cut(s) 323, 390
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 395
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 209, 473
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 537
BsuTUI ATCGAT 1 cut(s) 537
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 537
CviAII CATG 1 cut(s) 618
CviJI RGCY 6 cut(s) 5, 21, 178, 269, 313, 554
CviKI_1 RGCY 6 cut(s) 5, 21, 178, 269, 313, 554
DdeI CTNAG 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 323, 390
EarI CTCTTC 2 cut(s) 323, 390
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 207, 414
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 207, 414
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 207, 414
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 621
FaiI YATR 3 cut(s) 247, 249, 619
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 432
FatI CATG 1 cut(s) 617
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 354
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 269
HapII CCGG 2 cut(s) 83, 495
Hin1II CATG 1 cut(s) 621
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 382, 446
HpaII CCGG 2 cut(s) 83, 495
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 355, 427
Hpy188I TCNGA 3 cut(s) 381, 390, 613
Hpy188III TCNNGA 3 cut(s) 9, 338, 565
Hpy8I GTNNAC 2 cut(s) 355, 427
HpyAV CCTTC 2 cut(s) 193, 571
HpyCH4III ACNGT 3 cut(s) 121, 193, 502
HpyCH4V TGCA 3 cut(s) 251, 427, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 473
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 1 cut(s) 621
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 8 cut(s) 96, 234, 255, 279, 378, 413, 471, 508
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 395, 577
MboII GAAGA 5 cut(s) 22, 39, 127, 310, 377
MhlI GDGCHC 3 cut(s) 315, 337, 429
MluCI AATT 5 cut(s) 26, 42, 260, 588, 602
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 6 cut(s) 32, 309, 322, 326, 332, 380
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 83, 495
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 209, 473
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 247
NlaIII CATG 1 cut(s) 621
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 395, 577
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 446
PflFI GACNNNGTC 1 cut(s) 545
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 315
PspEI GGTNACC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 353
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 315, 337, 429
SetI ASST 6 cut(s) 209, 271, 315, 372, 397, 402
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 5 cut(s) 26, 42, 260, 588, 602
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 207, 414
TaaI ACNGT 3 cut(s) 121, 193, 502
TaqI TCGA 2 cut(s) 354, 537
TasI AATT 5 cut(s) 26, 42, 260, 588, 602
TfiI GAWTC 1 cut(s) 446
TseFI GTSAC 2 cut(s) 395, 577
Tsp45I GTSAC 2 cut(s) 395, 577
TspDTI ATGAA 2 cut(s) 91, 234
Tth111I GACNNNGTC 1 cut(s) 545
VneI GTGCAC 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 4 cut(s) 26, 260, 588, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.