Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

40243097 .. 40243611

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0332400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATGCTGTGGATGAGATGGCGGTGAGGTTGGTGGCCTCTCTGGGATTGGCTGATGGTTGGAGACCGGTGGACTTGAGGCCACCACGAGGAGAGGGCTTGCGCAACTCACAAACTTACTTGGTTGGCAAGCTTTTGACAGCTAGGGCTTTCAATAAGCAATCTTTCGTGAGGATGTTTAGAAGGGCTTGGAGACTCAATGGTAGATATATGAATAGAATACTTAGGGGAGGTCCTTGGGGCTTCGATCGTGCGCCTGTTGTTCTGGCACCATATGATGGTGTTGGGCAAATTGGGGTTGTACTGCTGAATTCACTGGCTTTCTGGGTGAAGATCAAAGGCCTCCCTCCTGCGTTCCATTCTGATAGGTGTCTTCGTAGGCTGGGCTACACCCTAGGGCGGTATTTGCAAAAAGACACGACTGAGTTCTGCACAGGTCGAATCCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

11.02

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	2 cut(s)	23, 400
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	89, 278, 399
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	133, 143
AluI	AGCT	2 cut(s)	133, 143
Alw26I	GTCTC	2 cut(s)	58, 187
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	3 cut(s)	36, 80, 340
ApoI	RAATTY	1 cut(s)	310
AsiGI	ACCGGT	1 cut(s)	67
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	105, 256
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	37, 340
AvaII	GGWCC	1 cut(s)	233
AvrII	CCTAGG	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	365
BccI	CCATC	3 cut(s)	13, 50, 272
BcoDI	GTCTC	2 cut(s)	58, 187
BfaI	CTAG	2 cut(s)	144, 395
BlnI	CCTAGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	236, 394
BsaWI	WCCGGW	2 cut(s)	67, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 278, 399
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	236, 394
BseGI	GGATG	3 cut(s)	10, 19, 180
BseLI	CCNNNNNNNGG	3 cut(s)	89, 278, 399
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	105
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	38, 82, 342
BshNI	GGYRCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	68, 445
BslI	CCNNNNNNNGG	3 cut(s)	89, 278, 399
BsmAI	GTCTC	2 cut(s)	58, 187
BsnI	GGCC	3 cut(s)	38, 82, 342
Bso31I	GGTCTC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	247, 333
BspACI	CCGC	2 cut(s)	23, 400
BspANI	GGCC	3 cut(s)	38, 82, 342
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	236, 394
BssMI	GATC	2 cut(s)	247, 333
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	236, 394
Bst2BI	CACGAG	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	101, 131
BstDEI	CTNAG	2 cut(s)	224, 423
BstF5I	GGATG	3 cut(s)	10, 19, 180
BstHHI	GCGC	2 cut(s)	105, 256
BstKTI	GATC	2 cut(s)	250, 336
BstMAI	GTCTC	2 cut(s)	58, 187
BstMBI	GATC	2 cut(s)	247, 333
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	38, 82, 342
BtsCI	GGATG	3 cut(s)	10, 19, 180
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	101, 131
CfoI	GCGC	2 cut(s)	105, 256
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	67
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	224, 423
DpnI	GATC	2 cut(s)	249, 335
DpnII	GATC	2 cut(s)	247, 333
Eco130I	CCWWGG	2 cut(s)	236, 394
Eco147I	AGGCCT	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	236, 394
ErhI	CCWWGG	2 cut(s)	236, 394
FaiI	YATR	4 cut(s)	210, 212, 274, 276
FauNDI	CATATG	1 cut(s)	274
FokI	GGATG	3 cut(s)	17, 26, 187
FspBI	CTAG	2 cut(s)	144, 395
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	2 cut(s)	104, 255
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	38, 82, 342
HapII	CCGG	2 cut(s)	68, 445
HhaI	GCGC	2 cut(s)	105, 256
Hin6I	GCGC	2 cut(s)	103, 254
HinP1I	GCGC	2 cut(s)	103, 254
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	195, 441
HpaII	CCGG	2 cut(s)	68, 445
HphI	GGTGA	2 cut(s)	37, 340
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	169, 445
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	409, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	2 cut(s)	224, 423
HspAI	GCGC	2 cut(s)	103, 254
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	247, 333
LpnPI	CCDG	9 cut(s)	29, 81, 251, 270, 302, 310, 363, 368, 420
MaeI	CTAG	2 cut(s)	144, 395
MalI	GATC	2 cut(s)	249, 335
MboI	GATC	2 cut(s)	247, 333
MboII	GAAGA	2 cut(s)	343, 365
MluCI	AATT	2 cut(s)	291, 310
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	21, 49, 72, 83, 88, 165, 224, 353, 357
MroI	TCCGGA	1 cut(s)	444
MspI	CCGG	2 cut(s)	68, 445
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	247, 333
NlaIV	GGNNCC	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	67
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	233
PspPPI	RGGWCCY	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	247, 333
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	189
SetI	ASST	6 cut(s)	32, 135, 145, 235, 371, 439
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	291, 310
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	23, 400
SspMI	CTAG	2 cut(s)	144, 395
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	236, 394
TaqI	TCGA	2 cut(s)	246, 439
TasI	AATT	2 cut(s)	291, 310
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	441
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	2 cut(s)	144, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.